Strain Fitness in Escherichia coli BW25113 around b0791

Experiment: carbon source D-Mannose 5mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybhO and ybhP overlap by 4 nucleotidesybhP and ybhQ are separated by 132 nucleotidesybhQ and ybhR overlap by 39 nucleotides b0789: ybhO - cardiolipin synthase 2 (NCBI), at 821,721 to 822,962 ybhO b0790: ybhP - predicted DNase (NCBI), at 822,959 to 823,720 ybhP b0791: ybhQ - predicted inner membrane protein (NCBI), at 823,853 to 824,263 ybhQ b0792: ybhR - predicted transporter subunit: membrane component of ABC superfamily (NCBI), at 824,225 to 825,331 ybhR Position (kb) 823 824 825Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 822.891 kb on - strandat 823.224 kb on + strand, within ybhPat 823.224 kb on + strand, within ybhPat 823.296 kb on - strand, within ybhPat 823.296 kb on - strand, within ybhPat 823.302 kb on - strand, within ybhPat 823.331 kb on + strand, within ybhPat 823.346 kb on + strand, within ybhPat 823.405 kb on + strand, within ybhPat 823.434 kb on - strand, within ybhPat 823.454 kb on - strand, within ybhPat 823.604 kb on - strand, within ybhPat 823.653 kb on - strandat 823.850 kb on + strandat 823.893 kb on - strandat 823.947 kb on + strand, within ybhQat 823.961 kb on - strand, within ybhQat 823.993 kb on + strand, within ybhQat 824.064 kb on - strand, within ybhQat 824.068 kb on + strand, within ybhQat 824.288 kb on - strandat 824.354 kb on + strand, within ybhRat 824.354 kb on + strand, within ybhRat 824.371 kb on - strand, within ybhRat 824.371 kb on - strand, within ybhRat 824.501 kb on + strand, within ybhRat 824.559 kb on + strand, within ybhRat 824.621 kb on - strand, within ybhRat 824.689 kb on - strand, within ybhRat 824.788 kb on - strand, within ybhRat 825.226 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Mannose 5mM
remove
822,891 - -1.3
823,224 + ybhP b0790 0.35 +1.6
823,224 + ybhP b0790 0.35 -0.5
823,296 - ybhP b0790 0.44 +0.3
823,296 - ybhP b0790 0.44 +1.0
823,302 - ybhP b0790 0.45 +1.0
823,331 + ybhP b0790 0.49 -0.2
823,346 + ybhP b0790 0.51 -1.0
823,405 + ybhP b0790 0.59 +0.9
823,434 - ybhP b0790 0.62 -0.3
823,454 - ybhP b0790 0.65 +0.7
823,604 - ybhP b0790 0.85 -1.2
823,653 - +0.7
823,850 + -0.6
823,893 - +0.2
823,947 + ybhQ b0791 0.23 +1.1
823,961 - ybhQ b0791 0.26 +0.9
823,993 + ybhQ b0791 0.34 +1.3
824,064 - ybhQ b0791 0.51 +1.3
824,068 + ybhQ b0791 0.52 +0.4
824,288 - +1.0
824,354 + ybhR b0792 0.12 -1.4
824,354 + ybhR b0792 0.12 -1.8
824,371 - ybhR b0792 0.13 -3.1
824,371 - ybhR b0792 0.13 +0.1
824,501 + ybhR b0792 0.25 -1.3
824,559 + ybhR b0792 0.30 +0.5
824,621 - ybhR b0792 0.36 +0.7
824,689 - ybhR b0792 0.42 -3.9
824,788 - ybhR b0792 0.51 +0.4
825,226 + -0.8

Or see this region's nucleotide sequence