Strain Fitness in Escherichia coli BW25113 around b3715

Experiment: carbon source D-Glucose 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source D-Glucose 5mM
3,893,881	+	yieG	b3714	0.44	+0.8
3,893,934	-	yieG	b3714	0.48	-0.1
3,893,934	-	yieG	b3714	0.48	-1.6
3,893,960	-	yieG	b3714	0.50	-0.1
3,893,967	+	yieG	b3714	0.50	-0.2
3,893,968	-	yieG	b3714	0.50	-1.6
3,893,968	-	yieG	b3714	0.50	-2.6
3,893,979	+	yieG	b3714	0.51	-2.7
3,893,979	+	yieG	b3714	0.51	-3.4
3,893,982	-	yieG	b3714	0.51	-2.4
3,894,006	+	yieG	b3714	0.53	+1.9
3,894,009	+	yieG	b3714	0.53	-4.9
3,894,041	+	yieG	b3714	0.56	+1.6
3,894,049	-	yieG	b3714	0.56	-2.5
3,894,080	-	yieG	b3714	0.59	-1.7
3,894,080	-	yieG	b3714	0.59	+0.2
3,894,094	+	yieG	b3714	0.60	+0.0
3,894,134	-	yieG	b3714	0.63	-2.4
3,894,135	-	yieG	b3714	0.63	-0.1
3,894,168	+	yieG	b3714	0.65	+2.0
3,894,168	-	yieG	b3714	0.65	+1.8
3,894,168	-	yieG	b3714	0.65	-3.0
3,894,171	-	yieG	b3714	0.65	-2.5
3,894,197	+	yieG	b3714	0.67	-2.7
3,894,205	-	yieG	b3714	0.68	-2.1
3,894,226	+	yieG	b3714	0.70	-3.1
3,894,274	+	yieG	b3714	0.73	+0.4
3,894,348	+	yieG	b3714	0.79	+0.2
3,894,348	+	yieG	b3714	0.79	+1.6
3,894,377	-	yieG	b3714	0.81	+0.2
3,894,399	+	yieG	b3714	0.83	+1.7
3,894,399	+	yieG	b3714	0.83	-2.3
3,894,401	+	yieG	b3714	0.83	+0.3
3,894,409	-	yieG	b3714	0.83	-1.1
3,894,423	+	yieG	b3714	0.84	+0.5
3,894,424	+	yieG	b3714	0.84	-0.4
3,894,430	-	yieG	b3714	0.85	+0.8
3,894,451	+	yieG	b3714	0.86	+0.4
3,894,451	+	yieG	b3714	0.86	-3.1
3,894,464	-	yieG	b3714	0.87	-0.8
3,894,521	+				-0.7
3,894,548	+				+0.5
3,894,548	+				-1.1
3,894,553	+				-0.2
3,894,553	+				-3.3
3,894,566	-				-1.0
3,894,566	-				+1.2
3,894,602	-				+1.4
3,894,620	+				-2.8
3,894,628	-				-1.0
3,894,657	-				-2.2
3,894,770	+				-3.7
3,894,841	+				-0.6
3,894,874	-	yieH	b3715	0.12	-1.1
3,894,917	-	yieH	b3715	0.18	+0.1
3,894,939	+	yieH	b3715	0.21	+1.0
3,894,939	+	yieH	b3715	0.21	-1.6
3,894,978	+	yieH	b3715	0.27	-2.0
3,894,978	+	yieH	b3715	0.27	-1.5
3,895,023	+	yieH	b3715	0.34	+0.1
3,895,031	-	yieH	b3715	0.35	+0.9
3,895,062	-	yieH	b3715	0.40	-1.2
3,895,069	-	yieH	b3715	0.41	+0.4
3,895,080	-	yieH	b3715	0.42	-0.7
3,895,090	+	yieH	b3715	0.44	+0.2
3,895,098	-	yieH	b3715	0.45	+0.4
3,895,110	+	yieH	b3715	0.47	+0.1
3,895,186	-	yieH	b3715	0.58	+0.9
3,895,186	-	yieH	b3715	0.58	-0.1
3,895,190	-	yieH	b3715	0.59	-3.4
3,895,206	+	yieH	b3715	0.61	-1.0
3,895,230	-	yieH	b3715	0.65	-2.6
3,895,230	-	yieH	b3715	0.65	+0.2
3,895,243	-	yieH	b3715	0.67	-3.5
3,895,243	-	yieH	b3715	0.67	-3.3
3,895,348	+	yieH	b3715	0.83	-2.8
3,895,348	-	yieH	b3715	0.83	+1.1
3,895,348	-	yieH	b3715	0.83	+1.0
3,895,366	+	yieH	b3715	0.85	-1.2
3,895,405	-				-2.6
3,895,406	-				-2.1
3,895,419	+				-3.4
3,895,427	-				+0.3
3,895,427	-				-4.0
3,895,427	-				+0.3
3,895,427	-				+0.0
3,895,428	+				-0.3
3,895,462	+				-1.9
3,895,462	+				-4.0
3,895,470	-				+0.3
3,895,470	-				+1.9
3,895,470	-				-3.8
3,895,470	-				+0.8
3,895,474	+				+0.8
3,895,474	+				-2.1
3,895,479	+				-1.4
3,895,482	-				-3.9
3,895,482	-				-2.2
3,895,483	-				+1.1
3,895,483	-				+0.2
3,895,508	+				+1.7
3,895,525	+				-0.4
3,895,530	+				-0.1
3,895,530	+				+0.1
3,895,531	+				-0.1
3,895,531	+				+0.4
3,895,533	-				-0.5
3,895,535	+				+2.4
3,895,535	+				+0.5
3,895,535	-				-1.8
3,895,597	+	yieI	b3716	0.15	-2.1
3,895,608	-	yieI	b3716	0.17	-4.0
3,895,631	-	yieI	b3716	0.22	+0.4
3,895,640	+	yieI	b3716	0.24	-0.3
3,895,650	+	yieI	b3716	0.26	+0.3
3,895,724	-	yieI	b3716	0.42	-4.0
3,895,724	-	yieI	b3716	0.42	-1.1
3,895,724	-	yieI	b3716	0.42	-0.7
3,895,724	-	yieI	b3716	0.42	-3.8
3,895,724	-	yieI	b3716	0.42	-0.0
3,895,770	+	yieI	b3716	0.51	-0.4
3,895,781	+	yieI	b3716	0.54	+1.0
3,895,782	-	yieI	b3716	0.54	-0.5
3,895,782	-	yieI	b3716	0.54	+2.4
3,895,789	-	yieI	b3716	0.56	+0.7
3,895,839	-	yieI	b3716	0.66	-2.2
3,895,839	-	yieI	b3716	0.66	+2.1
3,895,839	-	yieI	b3716	0.66	+1.7
3,895,853	+	yieI	b3716	0.69	+1.5
3,895,858	+	yieI	b3716	0.70	+1.1
3,895,858	+	yieI	b3716	0.70	+1.7
3,895,928	-	yieI	b3716	0.85	+0.2
3,895,928	-	yieI	b3716	0.85	-0.4
3,895,933	-	yieI	b3716	0.86	-1.4
3,895,984	+				-2.3
3,895,984	+				-2.7
3,895,986	+				-0.7
3,895,991	+				-0.5
3,895,999	+				-4.2
3,896,021	+				+0.2
3,896,040	-				-1.2
3,896,040	-				+2.2
3,896,074	+				-2.1
3,896,119	+	cbrC	b3717	0.13	+0.9
3,896,119	+	cbrC	b3717	0.13	+1.8
3,896,119	+	cbrC	b3717	0.13	+2.0
3,896,120	+	cbrC	b3717	0.13	+1.1
3,896,120	+	cbrC	b3717	0.13	+0.1
3,896,206	+	cbrC	b3717	0.27	-1.5
3,896,206	+	cbrC	b3717	0.27	-4.0
3,896,220	-	cbrC	b3717	0.30	-1.5
3,896,220	-	cbrC	b3717	0.30	-1.8
3,896,230	+	cbrC	b3717	0.31	-1.2
3,896,230	-	cbrC	b3717	0.31	-1.7
3,896,230	-	cbrC	b3717	0.31	-2.4
3,896,240	-	cbrC	b3717	0.33	-3.4
3,896,240	-	cbrC	b3717	0.33	+0.0
3,896,240	-	cbrC	b3717	0.33	-2.4
3,896,240	-	cbrC	b3717	0.33	-2.2
3,896,277	+	cbrC	b3717	0.39	+0.2
3,896,283	-	cbrC	b3717	0.40	+1.0
3,896,288	+	cbrC	b3717	0.41	-0.1
3,896,301	+	cbrC	b3717	0.44	-3.3
3,896,301	+	cbrC	b3717	0.44	+1.7
3,896,322	+	cbrC	b3717	0.47	-0.1
3,896,335	+	cbrC	b3717	0.49	+0.8
3,896,335	+	cbrC	b3717	0.49	+0.8
3,896,343	-	cbrC	b3717	0.51	-2.3
3,896,345	+	cbrC	b3717	0.51	-0.7
3,896,380	+	cbrC	b3717	0.57	+0.0
3,896,384	-	cbrC	b3717	0.58	-1.8
3,896,385	+	cbrC	b3717	0.58	-1.7
3,896,452	+	cbrC	b3717	0.69	-0.0
3,896,452	+	cbrC	b3717	0.69	+0.5