Strain Fitness in Escherichia coli BW25113 around b2698

Experiment: carbon source D-Glucose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntalaS and recX are separated by 127 nucleotidesrecX and recA are separated by 68 nucleotides b2697: alaS - alanyl-tRNA synthetase (NCBI), at 2,817,403 to 2,820,033 alaS b2698: recX - RecA regulator RecX (NCBI), at 2,820,161 to 2,820,661 recX b2699: recA - recombinase A (NCBI), at 2,820,730 to 2,821,791 recA Position (kb) 2820 2821Strain fitness (log2 ratio) -1 0 1 2 3at 2820.070 kb on - strandat 2820.143 kb on + strandat 2820.258 kb on + strand, within recXat 2820.258 kb on + strand, within recXat 2820.457 kb on - strand, within recXat 2820.634 kb on - strandat 2820.929 kb on + strand, within recAat 2821.141 kb on - strand, within recAat 2821.166 kb on - strand, within recAat 2821.522 kb on + strand, within recAat 2821.638 kb on + strand, within recA

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 5mM
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2,820,070 - +0.7
2,820,143 + -1.7
2,820,258 + recX b2698 0.19 +0.6
2,820,258 + recX b2698 0.19 +2.0
2,820,457 - recX b2698 0.59 +1.5
2,820,634 - -1.2
2,820,929 + recA b2699 0.19 -0.8
2,821,141 - recA b2699 0.39 +3.0
2,821,166 - recA b2699 0.41 -1.3
2,821,522 + recA b2699 0.75 +1.0
2,821,638 + recA b2699 0.85 -0.2

Or see this region's nucleotide sequence