Strain Fitness in Escherichia coli BW25113 around b2193

Experiment: carbon source D-Glucose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinsH-8 and narP are separated by 418 nucleotidesnarP and ccmH are separated by 210 nucleotides b2192: insH-8 - IS5 transposase and trans-activator (NCBI), at 2,287,087 to 2,288,103 insH-8 b2193: narP - DNA-binding response regulator in two-component regulatory system with NarQ or NarX (NCBI), at 2,288,522 to 2,289,169 narP b2194: ccmH - heme lyase, CcmH subunit (NCBI), at 2,289,380 to 2,290,432 ccmH Position (kb) 2288 2289 2290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2288.109 kb on + strandat 2288.192 kb on + strandat 2288.192 kb on + strandat 2288.257 kb on + strandat 2288.257 kb on + strandat 2288.583 kb on + strandat 2288.583 kb on + strandat 2288.591 kb on - strand, within narPat 2288.591 kb on - strand, within narPat 2288.621 kb on - strand, within narPat 2288.621 kb on - strand, within narPat 2288.730 kb on + strand, within narPat 2288.746 kb on - strand, within narPat 2288.779 kb on + strand, within narPat 2288.929 kb on + strand, within narPat 2288.929 kb on + strand, within narPat 2288.987 kb on - strand, within narPat 2289.070 kb on + strand, within narPat 2289.354 kb on - strandat 2289.392 kb on - strandat 2289.392 kb on - strandat 2289.484 kb on + strandat 2289.484 kb on + strandat 2289.560 kb on + strand, within ccmHat 2289.568 kb on - strand, within ccmHat 2289.568 kb on - strand, within ccmHat 2289.587 kb on + strand, within ccmHat 2289.588 kb on - strand, within ccmHat 2289.588 kb on - strand, within ccmHat 2289.725 kb on + strand, within ccmHat 2289.725 kb on + strand, within ccmHat 2289.733 kb on - strand, within ccmHat 2289.733 kb on - strand, within ccmHat 2289.743 kb on - strand, within ccmHat 2289.831 kb on + strand, within ccmHat 2289.831 kb on + strand, within ccmHat 2289.864 kb on + strand, within ccmHat 2289.896 kb on - strand, within ccmHat 2290.056 kb on - strand, within ccmHat 2290.070 kb on + strand, within ccmHat 2290.113 kb on - strand, within ccmHat 2290.113 kb on - strand, within ccmHat 2290.124 kb on - strand, within ccmHat 2290.124 kb on - strand, within ccmHat 2290.130 kb on + strand, within ccmH

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 5mM
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2,288,109 + -0.1
2,288,192 + +0.9
2,288,192 + +0.5
2,288,257 + +0.3
2,288,257 + +0.4
2,288,583 + -0.8
2,288,583 + +0.1
2,288,591 - narP b2193 0.11 +2.2
2,288,591 - narP b2193 0.11 +2.3
2,288,621 - narP b2193 0.15 -1.9
2,288,621 - narP b2193 0.15 +4.2
2,288,730 + narP b2193 0.32 +0.0
2,288,746 - narP b2193 0.35 -0.5
2,288,779 + narP b2193 0.40 +0.5
2,288,929 + narP b2193 0.63 +0.5
2,288,929 + narP b2193 0.63 +0.7
2,288,987 - narP b2193 0.72 +1.4
2,289,070 + narP b2193 0.85 -0.8
2,289,354 - -0.2
2,289,392 - -0.4
2,289,392 - +1.1
2,289,484 + +2.2
2,289,484 + +0.1
2,289,560 + ccmH b2194 0.17 +0.8
2,289,568 - ccmH b2194 0.18 -0.8
2,289,568 - ccmH b2194 0.18 +0.5
2,289,587 + ccmH b2194 0.20 -2.7
2,289,588 - ccmH b2194 0.20 +0.9
2,289,588 - ccmH b2194 0.20 -0.0
2,289,725 + ccmH b2194 0.33 -1.7
2,289,725 + ccmH b2194 0.33 +1.8
2,289,733 - ccmH b2194 0.34 +0.1
2,289,733 - ccmH b2194 0.34 +1.4
2,289,743 - ccmH b2194 0.34 +0.6
2,289,831 + ccmH b2194 0.43 +0.5
2,289,831 + ccmH b2194 0.43 +0.8
2,289,864 + ccmH b2194 0.46 -0.1
2,289,896 - ccmH b2194 0.49 -4.4
2,290,056 - ccmH b2194 0.64 +1.4
2,290,070 + ccmH b2194 0.66 -0.1
2,290,113 - ccmH b2194 0.70 +1.2
2,290,113 - ccmH b2194 0.70 -1.4
2,290,124 - ccmH b2194 0.71 +0.5
2,290,124 - ccmH b2194 0.71 +1.3
2,290,130 + ccmH b2194 0.71 -1.6

Or see this region's nucleotide sequence