Strain Fitness in Escherichia coli BW25113 around b1756

Experiment: carbon source D-Glucose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynjC and ynjD overlap by 1 nucleotidesynjD and b1757 are separated by 66 nucleotides b1755: ynjC - fused transporter subunits of ABC superfamily: membrane components (RefSeq), at 1,835,236 to 1,836,771 ynjC b1756: ynjD - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 1,836,771 to 1,837,424 ynjD b1757: b1757 - putative thiosulfate sulfur transferase (VIMSS), at 1,837,491 to 1,838,798 b1757 Position (kb) 1836 1837 1838Strain fitness (log2 ratio) -2 -1 0 1 2at 1835.896 kb on + strand, within ynjCat 1835.896 kb on + strand, within ynjCat 1835.982 kb on - strand, within ynjCat 1835.982 kb on - strand, within ynjCat 1836.212 kb on - strand, within ynjCat 1836.387 kb on + strand, within ynjCat 1836.584 kb on - strand, within ynjCat 1836.773 kb on - strandat 1836.840 kb on - strand, within ynjDat 1837.048 kb on - strand, within ynjDat 1837.083 kb on + strand, within ynjDat 1837.152 kb on + strand, within ynjDat 1837.203 kb on - strand, within ynjDat 1837.203 kb on - strand, within ynjDat 1837.248 kb on + strand, within ynjDat 1837.272 kb on - strand, within ynjDat 1837.793 kb on + strand, within b1757at 1837.793 kb on + strand, within b1757at 1838.008 kb on - strand, within b1757at 1838.022 kb on + strand, within b1757at 1838.065 kb on - strand, within b1757at 1838.179 kb on + strand, within b1757at 1838.194 kb on - strand, within b1757

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 5mM
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1,835,896 + ynjC b1755 0.43 -1.4
1,835,896 + ynjC b1755 0.43 -1.2
1,835,982 - ynjC b1755 0.49 -1.5
1,835,982 - ynjC b1755 0.49 -2.3
1,836,212 - ynjC b1755 0.64 +1.0
1,836,387 + ynjC b1755 0.75 -2.6
1,836,584 - ynjC b1755 0.88 -0.1
1,836,773 - -1.6
1,836,840 - ynjD b1756 0.11 +1.2
1,837,048 - ynjD b1756 0.42 +1.8
1,837,083 + ynjD b1756 0.48 +0.1
1,837,152 + ynjD b1756 0.58 +0.6
1,837,203 - ynjD b1756 0.66 +2.5
1,837,203 - ynjD b1756 0.66 -1.2
1,837,248 + ynjD b1756 0.73 -0.4
1,837,272 - ynjD b1756 0.77 +2.4
1,837,793 + b1757 b1757 0.23 +1.3
1,837,793 + b1757 b1757 0.23 -1.8
1,838,008 - b1757 b1757 0.40 -0.3
1,838,022 + b1757 b1757 0.41 +0.9
1,838,065 - b1757 b1757 0.44 +0.9
1,838,179 + b1757 b1757 0.53 +1.0
1,838,194 - b1757 b1757 0.54 -1.5

Or see this region's nucleotide sequence