Experiment: carbon source D-Glucose 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybbP and rhsD are separated by 430 nucleotides rhsD and ybbC are separated by 39 nucleotides ybbC and ylbH are separated by 2 nucleotides
b0496: ybbP - predicted inner membrane protein (NCBI), at 519,640 to 522,054
ybbP
b0497: rhsD - rhsD element protein (NCBI), at 522,485 to 526,765
rhsD
b0498: ybbC - hypothetical protein (NCBI), at 526,805 to 527,173
ybbC
b0499: ylbH - conserved protein, rhs-like (RefSeq), at 527,176 to 527,883
ylbH
Position (kb) 522
523
524
525
526
527 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 521.609 kb on + strand, within ybbP at 521.659 kb on - strand, within ybbP at 521.698 kb on - strand, within ybbP at 521.736 kb on + strand, within ybbP at 521.750 kb on - strand, within ybbP at 522.015 kb on + strand at 522.015 kb on + strand at 522.015 kb on + strand at 522.033 kb on + strand at 522.033 kb on + strand at 522.033 kb on + strand at 522.049 kb on + strand at 522.049 kb on + strand at 522.050 kb on + strand at 522.053 kb on + strand at 522.053 kb on + strand at 522.053 kb on + strand at 522.058 kb on + strand at 522.074 kb on + strand at 522.074 kb on + strand at 522.109 kb on + strand at 522.109 kb on + strand at 522.462 kb on - strand at 522.462 kb on - strand at 522.487 kb on - strand at 522.508 kb on + strand at 522.508 kb on + strand at 522.518 kb on - strand at 522.522 kb on - strand at 522.522 kb on - strand at 522.532 kb on - strand at 522.534 kb on - strand at 522.534 kb on - strand at 522.545 kb on - strand at 522.565 kb on - strand at 522.585 kb on - strand at 522.585 kb on - strand at 522.589 kb on - strand at 522.589 kb on - strand at 522.600 kb on + strand at 522.653 kb on + strand at 522.661 kb on + strand at 522.661 kb on + strand at 522.811 kb on - strand at 522.891 kb on - strand at 522.906 kb on - strand at 522.921 kb on + strand, within rhsD at 522.998 kb on - strand, within rhsD at 522.998 kb on - strand, within rhsD at 523.030 kb on + strand, within rhsD at 523.045 kb on - strand, within rhsD at 523.109 kb on - strand, within rhsD at 523.136 kb on - strand, within rhsD at 523.185 kb on + strand, within rhsD at 523.185 kb on + strand, within rhsD at 523.221 kb on + strand, within rhsD at 523.221 kb on + strand, within rhsD at 523.309 kb on - strand, within rhsD at 523.393 kb on - strand, within rhsD at 523.435 kb on - strand, within rhsD at 523.438 kb on - strand, within rhsD at 523.443 kb on - strand, within rhsD at 523.490 kb on - strand, within rhsD at 523.669 kb on - strand, within rhsD at 523.669 kb on - strand, within rhsD at 523.720 kb on - strand, within rhsD at 523.770 kb on - strand, within rhsD at 523.793 kb on + strand, within rhsD at 523.814 kb on - strand, within rhsD at 523.814 kb on - strand, within rhsD at 523.818 kb on + strand, within rhsD at 523.818 kb on + strand, within rhsD at 523.949 kb on - strand, within rhsD at 524.205 kb on + strand, within rhsD at 524.205 kb on + strand, within rhsD at 524.213 kb on - strand, within rhsD at 524.347 kb on - strand, within rhsD at 524.365 kb on + strand, within rhsD at 524.365 kb on + strand, within rhsD at 524.370 kb on + strand, within rhsD at 524.370 kb on + strand, within rhsD at 524.380 kb on + strand, within rhsD at 524.429 kb on + strand, within rhsD at 524.437 kb on - strand, within rhsD at 524.510 kb on - strand, within rhsD at 524.529 kb on + strand, within rhsD at 524.557 kb on + strand, within rhsD at 524.565 kb on - strand, within rhsD at 524.565 kb on - strand, within rhsD at 524.565 kb on - strand, within rhsD at 524.565 kb on - strand, within rhsD at 524.565 kb on - strand, within rhsD at 524.592 kb on - strand, within rhsD at 524.605 kb on + strand, within rhsD at 524.607 kb on + strand, within rhsD at 524.725 kb on - strand, within rhsD at 524.791 kb on + strand, within rhsD at 524.791 kb on + strand, within rhsD at 525.950 kb on + strand, within rhsD at 525.991 kb on - strand, within rhsD at 525.991 kb on - strand, within rhsD at 526.049 kb on + strand, within rhsD at 526.065 kb on - strand, within rhsD at 526.065 kb on - strand, within rhsD at 526.066 kb on + strand, within rhsD at 526.072 kb on + strand, within rhsD at 526.072 kb on + strand, within rhsD at 526.072 kb on + strand, within rhsD at 526.072 kb on + strand, within rhsD at 526.086 kb on - strand, within rhsD at 526.087 kb on + strand, within rhsD at 526.095 kb on - strand, within rhsD at 526.113 kb on + strand, within rhsD at 526.113 kb on + strand, within rhsD at 526.113 kb on + strand, within rhsD at 526.121 kb on + strand, within rhsD at 526.123 kb on + strand, within rhsD at 526.123 kb on + strand, within rhsD at 526.123 kb on + strand, within rhsD at 526.123 kb on + strand, within rhsD at 526.123 kb on + strand, within rhsD at 526.123 kb on + strand, within rhsD at 526.124 kb on + strand, within rhsD at 526.126 kb on + strand, within rhsD at 526.126 kb on + strand, within rhsD at 526.126 kb on + strand, within rhsD at 526.126 kb on + strand, within rhsD at 526.132 kb on + strand, within rhsD at 526.133 kb on + strand, within rhsD at 526.133 kb on + strand, within rhsD at 526.165 kb on + strand, within rhsD at 526.165 kb on + strand, within rhsD at 526.165 kb on + strand, within rhsD at 526.165 kb on + strand, within rhsD at 526.165 kb on + strand, within rhsD at 526.165 kb on + strand, within rhsD at 526.165 kb on + strand, within rhsD at 526.165 kb on + strand, within rhsD at 526.167 kb on + strand, within rhsD at 526.170 kb on + strand, within rhsD at 526.179 kb on + strand, within rhsD at 526.235 kb on + strand, within rhsD at 526.247 kb on + strand, within rhsD at 526.270 kb on + strand, within rhsD at 526.270 kb on + strand, within rhsD at 526.281 kb on + strand, within rhsD at 526.281 kb on + strand, within rhsD at 526.282 kb on + strand, within rhsD at 526.282 kb on + strand, within rhsD at 526.291 kb on + strand, within rhsD at 526.291 kb on + strand, within rhsD at 526.302 kb on + strand, within rhsD at 526.302 kb on + strand, within rhsD at 526.303 kb on + strand, within rhsD at 526.303 kb on + strand, within rhsD at 526.315 kb on + strand, within rhsD at 526.315 kb on + strand, within rhsD at 526.326 kb on + strand, within rhsD at 526.350 kb on + strand at 526.350 kb on + strand at 526.351 kb on + strand at 526.353 kb on + strand at 526.395 kb on + strand at 526.397 kb on + strand at 526.400 kb on + strand at 526.414 kb on + strand at 526.419 kb on + strand at 526.420 kb on + strand at 526.432 kb on + strand at 526.437 kb on + strand at 526.437 kb on + strand at 526.524 kb on + strand at 526.526 kb on + strand at 526.526 kb on + strand at 526.544 kb on + strand at 526.546 kb on + strand at 526.569 kb on + strand at 526.569 kb on + strand at 526.616 kb on + strand at 526.661 kb on + strand at 526.661 kb on + strand at 526.674 kb on + strand at 526.746 kb on + strand at 526.746 kb on + strand at 526.871 kb on + strand, within ybbC at 527.187 kb on - strand at 527.214 kb on - strand at 527.219 kb on - strand at 527.222 kb on + strand at 527.227 kb on - strand at 527.241 kb on + strand at 527.256 kb on + strand, within ylbH at 527.256 kb on + strand, within ylbH at 527.263 kb on + strand, within ylbH at 527.268 kb on + strand, within ylbH at 527.276 kb on - strand, within ylbH at 527.291 kb on - strand, within ylbH at 527.298 kb on + strand, within ylbH at 527.309 kb on + strand, within ylbH at 527.309 kb on + strand, within ylbH at 527.322 kb on - strand, within ylbH at 527.342 kb on - strand, within ylbH at 527.342 kb on - strand, within ylbH at 527.345 kb on + strand, within ylbH at 527.361 kb on + strand, within ylbH at 527.361 kb on + strand, within ylbH at 527.361 kb on + strand, within ylbH at 527.361 kb on + strand, within ylbH at 527.363 kb on + strand, within ylbH at 527.365 kb on + strand, within ylbH at 527.365 kb on + strand, within ylbH at 527.371 kb on - strand, within ylbH at 527.371 kb on - strand, within ylbH at 527.373 kb on + strand, within ylbH at 527.373 kb on + strand, within ylbH at 527.373 kb on + strand, within ylbH at 527.378 kb on + strand, within ylbH at 527.378 kb on + strand, within ylbH at 527.383 kb on + strand, within ylbH at 527.383 kb on + strand, within ylbH at 527.384 kb on + strand, within ylbH at 527.391 kb on - strand, within ylbH at 527.396 kb on + strand, within ylbH at 527.400 kb on + strand, within ylbH at 527.406 kb on + strand, within ylbH at 527.406 kb on + strand, within ylbH at 527.406 kb on + strand, within ylbH at 527.406 kb on + strand, within ylbH at 527.406 kb on + strand, within ylbH at 527.412 kb on - strand, within ylbH at 527.413 kb on + strand, within ylbH at 527.418 kb on + strand, within ylbH at 527.430 kb on + strand, within ylbH at 527.435 kb on + strand, within ylbH at 527.435 kb on + strand, within ylbH at 527.435 kb on + strand, within ylbH at 527.435 kb on + strand, within ylbH at 527.443 kb on + strand, within ylbH at 527.444 kb on + strand, within ylbH at 527.446 kb on + strand, within ylbH at 527.459 kb on + strand, within ylbH at 527.465 kb on + strand, within ylbH at 527.465 kb on + strand, within ylbH at 527.513 kb on + strand, within ylbH at 527.517 kb on + strand, within ylbH at 527.723 kb on + strand, within ylbH
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source D-Glucose 5mM remove 521,609 + ybbP b0496 0.82 +1.6 521,659 - ybbP b0496 0.84 -1.2 521,698 - ybbP b0496 0.85 +1.7 521,736 + ybbP b0496 0.87 +0.1 521,750 - ybbP b0496 0.87 -2.5 522,015 + +2.0 522,015 + -1.7 522,015 + -1.5 522,033 + +1.0 522,033 + -1.5 522,033 + +0.2 522,049 + +2.5 522,049 + -3.1 522,050 + +1.1 522,053 + -3.6 522,053 + -0.3 522,053 + +1.2 522,058 + +0.5 522,074 + +0.1 522,074 + -1.7 522,109 + +0.3 522,109 + -0.7 522,462 - +0.9 522,462 - +1.9 522,487 - +2.5 522,508 + +0.9 522,508 + +2.9 522,518 - -2.2 522,522 - +0.3 522,522 - +0.6 522,532 - +1.3 522,534 - +1.3 522,534 - +0.9 522,545 - -2.7 522,565 - +1.3 522,585 - -2.8 522,585 - +0.3 522,589 - -2.0 522,589 - -0.2 522,600 + +1.0 522,653 + +2.6 522,661 + +1.1 522,661 + -2.4 522,811 - -1.7 522,891 - -0.2 522,906 - +0.7 522,921 + rhsD b0497 0.10 +0.5 522,998 - rhsD b0497 0.12 +0.5 522,998 - rhsD b0497 0.12 +0.2 523,030 + rhsD b0497 0.13 -0.1 523,045 - rhsD b0497 0.13 +1.9 523,109 - rhsD b0497 0.15 -3.6 523,136 - rhsD b0497 0.15 -4.1 523,185 + rhsD b0497 0.16 -0.0 523,185 + rhsD b0497 0.16 +0.2 523,221 + rhsD b0497 0.17 +0.7 523,221 + rhsD b0497 0.17 -1.4 523,309 - rhsD b0497 0.19 +1.7 523,393 - rhsD b0497 0.21 -0.0 523,435 - rhsD b0497 0.22 -0.4 523,438 - rhsD b0497 0.22 -1.7 523,443 - rhsD b0497 0.22 -0.8 523,490 - rhsD b0497 0.23 -0.1 523,669 - rhsD b0497 0.28 +1.2 523,669 - rhsD b0497 0.28 +1.3 523,720 - rhsD b0497 0.29 +1.1 523,770 - rhsD b0497 0.30 +2.6 523,793 + rhsD b0497 0.31 -0.5 523,814 - rhsD b0497 0.31 +1.4 523,814 - rhsD b0497 0.31 -0.0 523,818 + rhsD b0497 0.31 +0.7 523,818 + rhsD b0497 0.31 +3.0 523,949 - rhsD b0497 0.34 -1.8 524,205 + rhsD b0497 0.40 -0.2 524,205 + rhsD b0497 0.40 +0.6 524,213 - rhsD b0497 0.40 +0.2 524,347 - rhsD b0497 0.43 -0.6 524,365 + rhsD b0497 0.44 +2.1 524,365 + rhsD b0497 0.44 +2.3 524,370 + rhsD b0497 0.44 -1.4 524,370 + rhsD b0497 0.44 -0.1 524,380 + rhsD b0497 0.44 +2.9 524,429 + rhsD b0497 0.45 -0.7 524,437 - rhsD b0497 0.46 -2.5 524,510 - rhsD b0497 0.47 +2.5 524,529 + rhsD b0497 0.48 +1.2 524,557 + rhsD b0497 0.48 -4.0 524,565 - rhsD b0497 0.49 -3.1 524,565 - rhsD b0497 0.49 +1.4 524,565 - rhsD b0497 0.49 -3.6 524,565 - rhsD b0497 0.49 -1.8 524,565 - rhsD b0497 0.49 -3.4 524,592 - rhsD b0497 0.49 -0.7 524,605 + rhsD b0497 0.50 +1.7 524,607 + rhsD b0497 0.50 +1.9 524,725 - rhsD b0497 0.52 -0.0 524,791 + rhsD b0497 0.54 +3.4 524,791 + rhsD b0497 0.54 +2.1 525,950 + rhsD b0497 0.81 +0.4 525,991 - rhsD b0497 0.82 +0.9 525,991 - rhsD b0497 0.82 -2.0 526,049 + rhsD b0497 0.83 +1.0 526,065 - rhsD b0497 0.84 -1.0 526,065 - rhsD b0497 0.84 -0.3 526,066 + rhsD b0497 0.84 -0.5 526,072 + rhsD b0497 0.84 +1.7 526,072 + rhsD b0497 0.84 +1.7 526,072 + rhsD b0497 0.84 +1.1 526,072 + rhsD b0497 0.84 +0.4 526,086 - rhsD b0497 0.84 -2.0 526,087 + rhsD b0497 0.84 +0.6 526,095 - rhsD b0497 0.84 -1.5 526,113 + rhsD b0497 0.85 -0.5 526,113 + rhsD b0497 0.85 -2.7 526,113 + rhsD b0497 0.85 -0.1 526,121 + rhsD b0497 0.85 -1.1 526,123 + rhsD b0497 0.85 +0.2 526,123 + rhsD b0497 0.85 +2.2 526,123 + rhsD b0497 0.85 +1.9 526,123 + rhsD b0497 0.85 -0.6 526,123 + rhsD b0497 0.85 +0.7 526,123 + rhsD b0497 0.85 -0.2 526,124 + rhsD b0497 0.85 +0.0 526,126 + rhsD b0497 0.85 +0.9 526,126 + rhsD b0497 0.85 -3.6 526,126 + rhsD b0497 0.85 +0.6 526,126 + rhsD b0497 0.85 -1.0 526,132 + rhsD b0497 0.85 +0.4 526,133 + rhsD b0497 0.85 -1.3 526,133 + rhsD b0497 0.85 -2.2 526,165 + rhsD b0497 0.86 +1.4 526,165 + rhsD b0497 0.86 +1.4 526,165 + rhsD b0497 0.86 +1.5 526,165 + rhsD b0497 0.86 -1.5 526,165 + rhsD b0497 0.86 +1.0 526,165 + rhsD b0497 0.86 -2.2 526,165 + rhsD b0497 0.86 -2.5 526,165 + rhsD b0497 0.86 +0.4 526,167 + rhsD b0497 0.86 +0.3 526,170 + rhsD b0497 0.86 -0.5 526,179 + rhsD b0497 0.86 +1.4 526,235 + rhsD b0497 0.88 -0.5 526,247 + rhsD b0497 0.88 -2.5 526,270 + rhsD b0497 0.88 -1.3 526,270 + rhsD b0497 0.88 -1.5 526,281 + rhsD b0497 0.89 -2.3 526,281 + rhsD b0497 0.89 +1.0 526,282 + rhsD b0497 0.89 -2.7 526,282 + rhsD b0497 0.89 +1.2 526,291 + rhsD b0497 0.89 -1.2 526,291 + rhsD b0497 0.89 +1.3 526,302 + rhsD b0497 0.89 +0.6 526,302 + rhsD b0497 0.89 +5.3 526,303 + rhsD b0497 0.89 -0.6 526,303 + rhsD b0497 0.89 +2.8 526,315 + rhsD b0497 0.89 -1.2 526,315 + rhsD b0497 0.89 +1.3 526,326 + rhsD b0497 0.90 -1.0 526,350 + -0.9 526,350 + +0.7 526,351 + +0.7 526,353 + -1.2 526,395 + -2.9 526,397 + -2.7 526,400 + -2.5 526,414 + +1.8 526,419 + -0.2 526,420 + -2.2 526,432 + -0.4 526,437 + -1.2 526,437 + +1.3 526,524 + +2.3 526,526 + +0.9 526,526 + -0.1 526,544 + +0.4 526,546 + +0.9 526,569 + -0.4 526,569 + +2.9 526,616 + -0.5 526,661 + +0.9 526,661 + +2.9 526,674 + +0.6 526,746 + +2.9 526,746 + +2.9 526,871 + ybbC b0498 0.18 +2.9 527,187 - +2.9 527,214 - +2.9 527,219 - +2.9 527,222 + +2.9 527,227 - +2.9 527,241 + +0.9 527,256 + ylbH b0499 0.11 +1.4 527,256 + ylbH b0499 0.11 +2.9 527,263 + ylbH b0499 0.12 +2.9 527,268 + ylbH b0499 0.13 +2.9 527,276 - ylbH b0499 0.14 -1.1 527,291 - ylbH b0499 0.16 +0.1 527,298 + ylbH b0499 0.17 +2.1 527,309 + ylbH b0499 0.19 +2.9 527,309 + ylbH b0499 0.19 -0.1 527,322 - ylbH b0499 0.21 +1.4 527,342 - ylbH b0499 0.23 +0.1 527,342 - ylbH b0499 0.23 -0.2 527,345 + ylbH b0499 0.24 +0.9 527,361 + ylbH b0499 0.26 -0.8 527,361 + ylbH b0499 0.26 +2.9 527,361 + ylbH b0499 0.26 +2.2 527,361 + ylbH b0499 0.26 +0.9 527,363 + ylbH b0499 0.26 -0.8 527,365 + ylbH b0499 0.27 +0.6 527,365 + ylbH b0499 0.27 +3.7 527,371 - ylbH b0499 0.28 -2.1 527,371 - ylbH b0499 0.28 -0.2 527,373 + ylbH b0499 0.28 +0.6 527,373 + ylbH b0499 0.28 +1.4 527,373 + ylbH b0499 0.28 +3.4 527,378 + ylbH b0499 0.29 -1.2 527,378 + ylbH b0499 0.29 -0.2 527,383 + ylbH b0499 0.29 -2.3 527,383 + ylbH b0499 0.29 +3.3 527,384 + ylbH b0499 0.29 -0.5 527,391 - ylbH b0499 0.30 +0.9 527,396 + ylbH b0499 0.31 -0.1 527,400 + ylbH b0499 0.32 -1.4 527,406 + ylbH b0499 0.32 +1.4 527,406 + ylbH b0499 0.32 +2.9 527,406 + ylbH b0499 0.32 +1.9 527,406 + ylbH b0499 0.32 -0.1 527,406 + ylbH b0499 0.32 -1.4 527,412 - ylbH b0499 0.33 +0.6 527,413 + ylbH b0499 0.33 +0.6 527,418 + ylbH b0499 0.34 -2.0 527,430 + ylbH b0499 0.36 -2.1 527,435 + ylbH b0499 0.37 +2.9 527,435 + ylbH b0499 0.37 -0.1 527,435 + ylbH b0499 0.37 +1.4 527,435 + ylbH b0499 0.37 +0.9 527,443 + ylbH b0499 0.38 -2.9 527,444 + ylbH b0499 0.38 -0.2 527,446 + ylbH b0499 0.38 +1.5 527,459 + ylbH b0499 0.40 -0.1 527,465 + ylbH b0499 0.41 +0.1 527,465 + ylbH b0499 0.41 -2.3 527,513 + ylbH b0499 0.48 +1.4 527,517 + ylbH b0499 0.48 +1.4 527,723 + ylbH b0499 0.77 +2.2
Or see this region's nucleotide sequence