Strain Fitness in Escherichia coli BW25113 around b0030

Experiment: carbon source D-Glucose 5mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntispH and rihC are separated by 65 nucleotidesrihC and dapB are separated by 166 nucleotides b0029: ispH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (NCBI), at 26,277 to 27,227 ispH b0030: rihC - ribonucleoside hydrolase 3 (NCBI), at 27,293 to 28,207 rihC b0031: dapB - dihydrodipicolinate reductase (NCBI), at 28,374 to 29,195 dapB Position (kb) 27 28 29Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 27.340 kb on - strandat 27.394 kb on - strand, within rihCat 27.554 kb on + strand, within rihCat 27.562 kb on - strand, within rihCat 27.623 kb on - strand, within rihCat 27.630 kb on + strand, within rihCat 27.630 kb on - strand, within rihCat 27.693 kb on - strand, within rihCat 27.742 kb on - strand, within rihCat 27.744 kb on + strand, within rihCat 27.769 kb on + strand, within rihCat 27.829 kb on - strand, within rihCat 27.892 kb on + strand, within rihCat 27.900 kb on - strand, within rihCat 27.900 kb on - strand, within rihCat 27.943 kb on + strand, within rihCat 27.943 kb on + strand, within rihCat 27.949 kb on - strand, within rihCat 28.002 kb on - strand, within rihCat 28.020 kb on - strand, within rihCat 28.073 kb on + strand, within rihCat 28.073 kb on + strand, within rihCat 28.240 kb on - strandat 28.259 kb on + strandat 28.259 kb on + strandat 28.323 kb on + strandat 28.323 kb on + strandat 28.379 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 5mM
remove
27,340 - -3.5
27,394 - rihC b0030 0.11 +2.0
27,554 + rihC b0030 0.29 +1.4
27,562 - rihC b0030 0.29 -0.4
27,623 - rihC b0030 0.36 -1.4
27,630 + rihC b0030 0.37 -1.6
27,630 - rihC b0030 0.37 -0.8
27,693 - rihC b0030 0.44 +0.3
27,742 - rihC b0030 0.49 -0.6
27,744 + rihC b0030 0.49 -4.0
27,769 + rihC b0030 0.52 +0.6
27,829 - rihC b0030 0.59 +1.9
27,892 + rihC b0030 0.65 +0.5
27,900 - rihC b0030 0.66 -0.7
27,900 - rihC b0030 0.66 -2.0
27,943 + rihC b0030 0.71 -3.1
27,943 + rihC b0030 0.71 -2.3
27,949 - rihC b0030 0.72 -1.6
28,002 - rihC b0030 0.77 -1.3
28,020 - rihC b0030 0.79 +0.7
28,073 + rihC b0030 0.85 -1.6
28,073 + rihC b0030 0.85 -1.2
28,240 - -0.7
28,259 + -0.1
28,259 + -0.1
28,323 + -3.2
28,323 + -0.4
28,379 - -4.2

Or see this region's nucleotide sequence