Experiment: carbon source D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sdiA and yecC are separated by 229 nucleotides yecC and yecS overlap by 4 nucleotides yecS and yedO are separated by 14 nucleotides
b1916: sdiA - DNA-binding transcriptional activator (NCBI), at 1,994,134 to 1,994,856
sdiA
b1917: yecC - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 1,995,086 to 1,995,838
yecC
b1918: yecS - predicted transporter subunit: membrane component of ABC superfamily (NCBI), at 1,995,835 to 1,996,503
yecS
b1919: yedO - putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS), at 1,996,518 to 1,997,504
yedO
Position (kb)
1995
1996
1997 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1994.859 kb on - strand at 1994.956 kb on + strand at 1994.990 kb on - strand at 1994.990 kb on - strand at 1995.030 kb on + strand at 1995.312 kb on - strand, within yecC at 1995.312 kb on - strand, within yecC at 1995.592 kb on + strand, within yecC at 1995.598 kb on - strand, within yecC at 1995.598 kb on - strand, within yecC at 1995.688 kb on + strand, within yecC at 1995.771 kb on - strand at 1995.777 kb on - strand at 1995.777 kb on - strand at 1995.779 kb on + strand at 1995.779 kb on + strand at 1995.779 kb on + strand at 1995.779 kb on + strand at 1995.880 kb on + strand at 1995.880 kb on + strand at 1995.968 kb on + strand, within yecS at 1995.976 kb on - strand, within yecS at 1996.355 kb on + strand, within yecS at 1996.445 kb on - strand at 1996.445 kb on - strand at 1996.446 kb on - strand at 1996.778 kb on - strand, within yedO at 1997.064 kb on - strand, within yedO at 1997.231 kb on - strand, within yedO at 1997.231 kb on - strand, within yedO at 1997.256 kb on - strand, within yedO
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source D-Glucose 20mM remove 1,994,859 - +3.0 1,994,956 + +1.5 1,994,990 - -1.2 1,994,990 - -0.9 1,995,030 + -0.2 1,995,312 - yecC b1917 0.30 +0.5 1,995,312 - yecC b1917 0.30 -0.4 1,995,592 + yecC b1917 0.67 -3.0 1,995,598 - yecC b1917 0.68 +0.3 1,995,598 - yecC b1917 0.68 +0.3 1,995,688 + yecC b1917 0.80 +0.2 1,995,771 - -3.5 1,995,777 - -2.0 1,995,777 - +0.2 1,995,779 + -1.9 1,995,779 + -0.9 1,995,779 + -0.5 1,995,779 + +0.5 1,995,880 + -1.6 1,995,880 + +0.5 1,995,968 + yecS b1918 0.20 +0.3 1,995,976 - yecS b1918 0.21 +1.0 1,996,355 + yecS b1918 0.78 +1.0 1,996,445 - -1.3 1,996,445 - -0.8 1,996,446 - +1.8 1,996,778 - yedO b1919 0.26 -4.4 1,997,064 - yedO b1919 0.55 -0.3 1,997,231 - yedO b1919 0.72 +0.6 1,997,231 - yedO b1919 0.72 +0.2 1,997,256 - yedO b1919 0.75 -2.1
Or see this region's nucleotide sequence