Strain Fitness in Escherichia coli BW25113 around b1918

Experiment: carbon source D-Glucose 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsdiA and yecC are separated by 229 nucleotidesyecC and yecS overlap by 4 nucleotidesyecS and yedO are separated by 14 nucleotides b1916: sdiA - DNA-binding transcriptional activator (NCBI), at 1,994,134 to 1,994,856 sdiA b1917: yecC - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 1,995,086 to 1,995,838 yecC b1918: yecS - predicted transporter subunit: membrane component of ABC superfamily (NCBI), at 1,995,835 to 1,996,503 yecS b1919: yedO - putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS), at 1,996,518 to 1,997,504 yedO Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1994.859 kb on - strandat 1994.956 kb on + strandat 1994.990 kb on - strandat 1994.990 kb on - strandat 1995.030 kb on + strandat 1995.312 kb on - strand, within yecCat 1995.312 kb on - strand, within yecCat 1995.592 kb on + strand, within yecCat 1995.598 kb on - strand, within yecCat 1995.598 kb on - strand, within yecCat 1995.688 kb on + strand, within yecCat 1995.771 kb on - strandat 1995.777 kb on - strandat 1995.777 kb on - strandat 1995.779 kb on + strandat 1995.779 kb on + strandat 1995.779 kb on + strandat 1995.779 kb on + strandat 1995.880 kb on + strandat 1995.880 kb on + strandat 1995.968 kb on + strand, within yecSat 1995.976 kb on - strand, within yecSat 1996.355 kb on + strand, within yecSat 1996.445 kb on - strandat 1996.445 kb on - strandat 1996.446 kb on - strandat 1996.778 kb on - strand, within yedOat 1997.064 kb on - strand, within yedOat 1997.231 kb on - strand, within yedOat 1997.231 kb on - strand, within yedOat 1997.256 kb on - strand, within yedO

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 20mM
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1,994,859 - +3.0
1,994,956 + +1.5
1,994,990 - -1.2
1,994,990 - -0.9
1,995,030 + -0.2
1,995,312 - yecC b1917 0.30 +0.5
1,995,312 - yecC b1917 0.30 -0.4
1,995,592 + yecC b1917 0.67 -3.0
1,995,598 - yecC b1917 0.68 +0.3
1,995,598 - yecC b1917 0.68 +0.3
1,995,688 + yecC b1917 0.80 +0.2
1,995,771 - -3.5
1,995,777 - -2.0
1,995,777 - +0.2
1,995,779 + -1.9
1,995,779 + -0.9
1,995,779 + -0.5
1,995,779 + +0.5
1,995,880 + -1.6
1,995,880 + +0.5
1,995,968 + yecS b1918 0.20 +0.3
1,995,976 - yecS b1918 0.21 +1.0
1,996,355 + yecS b1918 0.78 +1.0
1,996,445 - -1.3
1,996,445 - -0.8
1,996,446 - +1.8
1,996,778 - yedO b1919 0.26 -4.4
1,997,064 - yedO b1919 0.55 -0.3
1,997,231 - yedO b1919 0.72 +0.6
1,997,231 - yedO b1919 0.72 +0.2
1,997,256 - yedO b1919 0.75 -2.1

Or see this region's nucleotide sequence