Strain Fitness in Escherichia coli BW25113 around b1755

Experiment: carbon source D-Glucose 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb1754 and ynjC overlap by 28 nucleotidesynjC and ynjD overlap by 1 nucleotidesynjD and b1757 are separated by 66 nucleotides b1754: b1754 - orf, hypothetical protein (VIMSS), at 1,834,097 to 1,835,263 b1754 b1755: ynjC - fused transporter subunits of ABC superfamily: membrane components (RefSeq), at 1,835,236 to 1,836,771 ynjC b1756: ynjD - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 1,836,771 to 1,837,424 ynjD b1757: b1757 - putative thiosulfate sulfur transferase (VIMSS), at 1,837,491 to 1,838,798 b1757 Position (kb) 1835 1836 1837Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1834.332 kb on - strand, within b1754at 1834.427 kb on + strand, within b1754at 1834.893 kb on + strand, within b1754at 1835.210 kb on + strandat 1835.210 kb on + strandat 1835.245 kb on - strandat 1835.495 kb on + strand, within ynjCat 1835.643 kb on - strand, within ynjCat 1835.649 kb on - strand, within ynjCat 1835.682 kb on + strand, within ynjCat 1835.896 kb on + strand, within ynjCat 1835.896 kb on + strand, within ynjCat 1835.982 kb on - strand, within ynjCat 1835.982 kb on - strand, within ynjCat 1836.212 kb on - strand, within ynjCat 1836.387 kb on + strand, within ynjCat 1836.584 kb on - strand, within ynjCat 1836.773 kb on - strandat 1836.840 kb on - strand, within ynjDat 1837.048 kb on - strand, within ynjDat 1837.083 kb on + strand, within ynjDat 1837.152 kb on + strand, within ynjDat 1837.203 kb on - strand, within ynjDat 1837.203 kb on - strand, within ynjDat 1837.248 kb on + strand, within ynjDat 1837.272 kb on - strand, within ynjD

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 20mM
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1,834,332 - b1754 b1754 0.20 +0.5
1,834,427 + b1754 b1754 0.28 +2.0
1,834,893 + b1754 b1754 0.68 -1.3
1,835,210 + -0.2
1,835,210 + +0.5
1,835,245 - +1.1
1,835,495 + ynjC b1755 0.17 +1.5
1,835,643 - ynjC b1755 0.26 +0.5
1,835,649 - ynjC b1755 0.27 +1.0
1,835,682 + ynjC b1755 0.29 +0.7
1,835,896 + ynjC b1755 0.43 +1.1
1,835,896 + ynjC b1755 0.43 -0.9
1,835,982 - ynjC b1755 0.49 -0.2
1,835,982 - ynjC b1755 0.49 +1.0
1,836,212 - ynjC b1755 0.64 +0.2
1,836,387 + ynjC b1755 0.75 +0.1
1,836,584 - ynjC b1755 0.88 +2.9
1,836,773 - -0.3
1,836,840 - ynjD b1756 0.11 +1.1
1,837,048 - ynjD b1756 0.42 -0.0
1,837,083 + ynjD b1756 0.48 -0.1
1,837,152 + ynjD b1756 0.58 -0.5
1,837,203 - ynjD b1756 0.66 +0.7
1,837,203 - ynjD b1756 0.66 -1.9
1,837,248 + ynjD b1756 0.73 +0.2
1,837,272 - ynjD b1756 0.77 +0.1

Or see this region's nucleotide sequence