Experiment: NLDM_defined_nocarbon with D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02950 and OKGIIK_02955 are separated by 78 nucleotides OKGIIK_02955 and ybeY are separated by 147 nucleotides ybeY and phoH overlap by 4 nucleotides
OKGIIK_02950: OKGIIK_02950 - DUF4105 domain-containing protein, at 672,676 to 673,893
_02950
OKGIIK_02955: OKGIIK_02955 - CBS domain-containing protein, at 673,972 to 674,745
_02955
OKGIIK_02960: ybeY - rRNA maturation RNase YbeY, at 674,893 to 675,354
ybeY
OKGIIK_02965: phoH - Phosphate starvation-inducible protein PhoH, putative ATPase, at 675,351 to 676,370
phoH
Position (kb) 673
674
675 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 673.899 kb on - strand at 673.899 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.037 kb on - strand at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.115 kb on - strand, within OKGIIK_02955 at 674.310 kb on - strand, within OKGIIK_02955 at 674.310 kb on - strand, within OKGIIK_02955 at 674.310 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.791 kb on - strand at 674.791 kb on - strand at 674.791 kb on - strand at 674.791 kb on - strand at 674.791 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.856 kb on - strand at 674.894 kb on + strand at 674.895 kb on - strand at 675.388 kb on + strand at 675.388 kb on + strand at 675.388 kb on + strand at 675.388 kb on + strand at 675.388 kb on + strand at 675.389 kb on - strand at 675.389 kb on - strand at 675.510 kb on - strand, within phoH at 675.510 kb on - strand, within phoH at 675.510 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.736 kb on + strand, within phoH at 675.736 kb on + strand, within phoH at 675.736 kb on + strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose remove 673,899 - +1.5 673,899 - -0.7 674,037 - -3.9 674,037 - -2.3 674,037 - -2.3 674,037 - -3.7 674,037 - -3.0 674,037 - -3.1 674,037 - -3.2 674,037 - -0.9 674,115 - OKGIIK_02955 0.18 -0.9 674,115 - OKGIIK_02955 0.18 +1.1 674,115 - OKGIIK_02955 0.18 -3.3 674,115 - OKGIIK_02955 0.18 -4.7 674,115 - OKGIIK_02955 0.18 -3.6 674,115 - OKGIIK_02955 0.18 -2.7 674,115 - OKGIIK_02955 0.18 -0.3 674,115 - OKGIIK_02955 0.18 -1.7 674,115 - OKGIIK_02955 0.18 -2.5 674,310 - OKGIIK_02955 0.44 -0.9 674,310 - OKGIIK_02955 0.44 -2.7 674,310 - OKGIIK_02955 0.44 -2.1 674,448 - OKGIIK_02955 0.61 -1.9 674,448 - OKGIIK_02955 0.61 -0.9 674,448 - OKGIIK_02955 0.61 -3.3 674,448 - OKGIIK_02955 0.61 -4.0 674,448 - OKGIIK_02955 0.61 -1.9 674,448 - OKGIIK_02955 0.61 -1.9 674,448 - OKGIIK_02955 0.61 -2.1 674,448 - OKGIIK_02955 0.61 -0.3 674,448 - OKGIIK_02955 0.61 -1.9 674,448 - OKGIIK_02955 0.61 -1.7 674,791 - -1.3 674,791 - -2.1 674,791 - +0.2 674,791 - +0.1 674,791 - -2.7 674,813 - -0.7 674,813 - -0.3 674,813 - -1.9 674,813 - -1.7 674,813 - -0.9 674,813 - -2.1 674,813 - -0.7 674,856 - -0.3 674,894 + -0.9 674,895 - -0.2 675,388 + -2.3 675,388 + -1.3 675,388 + +0.1 675,388 + -1.0 675,388 + +1.1 675,389 - -0.3 675,389 - -2.0 675,510 - phoH OKGIIK_02965 0.16 -1.7 675,510 - phoH OKGIIK_02965 0.16 -1.9 675,510 - phoH OKGIIK_02965 0.16 -1.7 675,635 - phoH OKGIIK_02965 0.28 -0.3 675,635 - phoH OKGIIK_02965 0.28 -0.2 675,635 - phoH OKGIIK_02965 0.28 +0.1 675,635 - phoH OKGIIK_02965 0.28 -2.8 675,635 - phoH OKGIIK_02965 0.28 +0.7 675,635 - phoH OKGIIK_02965 0.28 -1.5 675,635 - phoH OKGIIK_02965 0.28 -1.9 675,664 + phoH OKGIIK_02965 0.31 -1.7 675,664 + phoH OKGIIK_02965 0.31 -0.9 675,664 + phoH OKGIIK_02965 0.31 -0.7 675,664 + phoH OKGIIK_02965 0.31 -2.3 675,664 + phoH OKGIIK_02965 0.31 -2.1 675,664 + phoH OKGIIK_02965 0.31 +0.3 675,664 + phoH OKGIIK_02965 0.31 -1.9 675,664 + phoH OKGIIK_02965 0.31 +0.9 675,664 + phoH OKGIIK_02965 0.31 -0.9 675,664 + phoH OKGIIK_02965 0.31 -0.7 675,664 + phoH OKGIIK_02965 0.31 -0.2 675,664 + phoH OKGIIK_02965 0.31 -2.3 675,664 + phoH OKGIIK_02965 0.31 +0.7 675,664 + phoH OKGIIK_02965 0.31 -0.7 675,665 - phoH OKGIIK_02965 0.31 +2.3 675,665 - phoH OKGIIK_02965 0.31 +0.7 675,665 - phoH OKGIIK_02965 0.31 -0.9 675,665 - phoH OKGIIK_02965 0.31 +0.4 675,665 - phoH OKGIIK_02965 0.31 -0.3 675,665 - phoH OKGIIK_02965 0.31 -0.3 675,665 - phoH OKGIIK_02965 0.31 +0.3 675,665 - phoH OKGIIK_02965 0.31 +0.8 675,665 - phoH OKGIIK_02965 0.31 +0.2 675,736 + phoH OKGIIK_02965 0.38 +0.2 675,736 + phoH OKGIIK_02965 0.38 +1.7 675,736 + phoH OKGIIK_02965 0.38 -0.0 675,737 - phoH OKGIIK_02965 0.38 -0.0 675,737 - phoH OKGIIK_02965 0.38 -0.2 675,737 - phoH OKGIIK_02965 0.38 -0.6 675,737 - phoH OKGIIK_02965 0.38 -1.3 675,737 - phoH OKGIIK_02965 0.38 -0.6 675,737 - phoH OKGIIK_02965 0.38 +0.7
Or see this region's nucleotide sequence