Experiment: NLDM_defined_nocarbon with D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01505 and mET2 are separated by 348 nucleotides mET2 and metB are separated by 181 nucleotides
OKGIIK_01505: OKGIIK_01505 - peroxiredoxin, at 338,793 to 339,428
_01505
OKGIIK_01510: mET2 - homoserine O-succinyltransferase, at 339,777 to 340,808
mET2
OKGIIK_01515: metB - cystathionine gamma-synthase, at 340,990 to 342,180
metB
Position (kb) 339
340
341 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 338.824 kb on + strand at 338.824 kb on + strand at 338.825 kb on - strand at 338.825 kb on - strand at 338.854 kb on + strand at 338.854 kb on + strand at 338.855 kb on - strand at 339.013 kb on + strand, within OKGIIK_01505 at 339.014 kb on - strand, within OKGIIK_01505 at 339.014 kb on - strand, within OKGIIK_01505 at 339.106 kb on + strand, within OKGIIK_01505 at 339.106 kb on + strand, within OKGIIK_01505 at 339.107 kb on - strand, within OKGIIK_01505 at 339.107 kb on - strand, within OKGIIK_01505 at 339.107 kb on - strand, within OKGIIK_01505 at 339.148 kb on + strand, within OKGIIK_01505 at 339.149 kb on - strand, within OKGIIK_01505 at 339.149 kb on - strand, within OKGIIK_01505 at 339.149 kb on - strand, within OKGIIK_01505 at 339.149 kb on - strand, within OKGIIK_01505 at 339.149 kb on - strand, within OKGIIK_01505 at 339.149 kb on - strand, within OKGIIK_01505 at 339.168 kb on + strand, within OKGIIK_01505 at 339.168 kb on + strand, within OKGIIK_01505 at 339.169 kb on - strand, within OKGIIK_01505 at 339.353 kb on - strand, within OKGIIK_01505 at 339.353 kb on - strand, within OKGIIK_01505 at 339.380 kb on + strand at 339.507 kb on - strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.512 kb on + strand at 339.513 kb on - strand at 339.513 kb on - strand at 339.513 kb on - strand at 339.513 kb on - strand at 339.513 kb on - strand at 339.513 kb on - strand at 339.513 kb on - strand at 339.513 kb on - strand at 339.514 kb on + strand at 339.514 kb on + strand at 339.514 kb on + strand at 339.514 kb on + strand at 339.514 kb on + strand at 339.514 kb on + strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.515 kb on - strand at 339.522 kb on + strand at 339.522 kb on + strand at 339.523 kb on - strand at 339.538 kb on + strand at 339.538 kb on + strand at 339.538 kb on + strand at 339.539 kb on - strand at 339.539 kb on - strand at 339.539 kb on - strand at 339.549 kb on + strand at 339.549 kb on + strand at 339.549 kb on + strand at 339.549 kb on + strand at 339.549 kb on + strand at 339.549 kb on + strand at 339.549 kb on + strand at 339.549 kb on + strand at 339.550 kb on - strand at 339.550 kb on - strand at 339.550 kb on - strand at 339.550 kb on - strand at 339.550 kb on - strand at 339.550 kb on - strand at 339.550 kb on - strand at 339.550 kb on - strand at 339.550 kb on - strand at 339.551 kb on + strand at 339.552 kb on - strand at 339.552 kb on - strand at 339.552 kb on - strand at 339.552 kb on - strand at 339.803 kb on + strand at 339.804 kb on - strand at 339.804 kb on - strand at 339.812 kb on + strand at 339.905 kb on + strand, within mET2 at 339.905 kb on + strand, within mET2 at 339.905 kb on + strand, within mET2 at 339.906 kb on - strand, within mET2 at 339.906 kb on - strand, within mET2 at 339.906 kb on - strand, within mET2 at 339.906 kb on - strand, within mET2 at 339.906 kb on - strand, within mET2 at 339.906 kb on - strand, within mET2 at 339.906 kb on - strand, within mET2 at 339.909 kb on + strand, within mET2 at 339.909 kb on + strand, within mET2 at 339.910 kb on - strand, within mET2 at 339.910 kb on - strand, within mET2 at 339.910 kb on - strand, within mET2 at 339.910 kb on - strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.942 kb on + strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 339.943 kb on - strand, within mET2 at 340.233 kb on + strand, within mET2 at 340.233 kb on + strand, within mET2 at 340.234 kb on - strand, within mET2 at 340.234 kb on - strand, within mET2 at 340.434 kb on + strand, within mET2 at 340.434 kb on + strand, within mET2 at 340.434 kb on + strand, within mET2 at 340.435 kb on - strand, within mET2 at 340.435 kb on - strand, within mET2 at 340.518 kb on + strand, within mET2 at 340.518 kb on + strand, within mET2 at 340.518 kb on + strand, within mET2 at 340.518 kb on + strand, within mET2 at 340.518 kb on + strand, within mET2 at 340.518 kb on + strand, within mET2 at 340.519 kb on - strand, within mET2 at 340.519 kb on - strand, within mET2 at 340.519 kb on - strand, within mET2 at 340.806 kb on + strand at 340.807 kb on - strand at 340.807 kb on - strand at 340.807 kb on - strand at 340.849 kb on - strand at 340.917 kb on + strand at 340.917 kb on + strand at 340.918 kb on - strand at 341.013 kb on + strand at 341.013 kb on + strand at 341.092 kb on + strand at 341.092 kb on + strand at 341.092 kb on + strand at 341.092 kb on + strand at 341.092 kb on + strand at 341.092 kb on + strand at 341.092 kb on + strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.093 kb on - strand at 341.125 kb on + strand, within metB at 341.125 kb on + strand, within metB at 341.126 kb on - strand, within metB at 341.126 kb on - strand, within metB at 341.126 kb on - strand, within metB at 341.126 kb on - strand, within metB at 341.126 kb on - strand, within metB at 341.131 kb on + strand, within metB at 341.131 kb on + strand, within metB at 341.132 kb on - strand, within metB at 341.132 kb on - strand, within metB at 341.132 kb on - strand, within metB at 341.293 kb on + strand, within metB at 341.414 kb on + strand, within metB at 341.415 kb on - strand, within metB at 341.415 kb on - strand, within metB at 341.415 kb on - strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.587 kb on + strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.588 kb on - strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.707 kb on + strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB at 341.708 kb on - strand, within metB
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose remove 338,824 + -1.2 338,824 + +1.4 338,825 - -3.1 338,825 - -1.2 338,854 + +1.2 338,854 + +1.6 338,855 - -0.2 339,013 + OKGIIK_01505 0.35 -0.6 339,014 - OKGIIK_01505 0.35 +0.3 339,014 - OKGIIK_01505 0.35 -0.0 339,106 + OKGIIK_01505 0.49 +0.2 339,106 + OKGIIK_01505 0.49 -1.6 339,107 - OKGIIK_01505 0.49 -0.7 339,107 - OKGIIK_01505 0.49 -1.1 339,107 - OKGIIK_01505 0.49 -1.5 339,148 + OKGIIK_01505 0.56 +0.1 339,149 - OKGIIK_01505 0.56 +1.1 339,149 - OKGIIK_01505 0.56 +0.2 339,149 - OKGIIK_01505 0.56 +1.6 339,149 - OKGIIK_01505 0.56 -2.9 339,149 - OKGIIK_01505 0.56 +0.8 339,149 - OKGIIK_01505 0.56 +0.6 339,168 + OKGIIK_01505 0.59 +0.6 339,168 + OKGIIK_01505 0.59 -1.5 339,169 - OKGIIK_01505 0.59 +1.4 339,353 - OKGIIK_01505 0.88 +1.5 339,353 - OKGIIK_01505 0.88 -0.2 339,380 + +0.0 339,507 - -0.2 339,512 + +0.5 339,512 + +0.8 339,512 + -0.8 339,512 + -1.2 339,512 + -0.4 339,512 + -1.1 339,512 + +0.4 339,512 + -0.2 339,512 + -2.2 339,512 + +1.2 339,512 + -0.4 339,512 + -0.3 339,512 + +1.2 339,512 + +0.6 339,512 + -1.6 339,512 + -0.0 339,513 - -1.2 339,513 - -1.1 339,513 - +0.0 339,513 - -2.0 339,513 - -1.0 339,513 - -0.3 339,513 - +0.6 339,513 - +2.4 339,514 + -0.8 339,514 + +1.2 339,514 + +0.7 339,514 + -2.2 339,514 + -0.1 339,514 + -2.0 339,515 - -1.3 339,515 - -0.8 339,515 - +1.5 339,515 - +0.8 339,515 - -0.2 339,515 - -1.5 339,515 - +1.7 339,515 - +0.1 339,515 - -1.0 339,515 - +1.8 339,522 + -0.2 339,522 + +4.9 339,523 - -0.8 339,538 + -0.2 339,538 + -1.5 339,538 + +0.5 339,539 - -1.0 339,539 - -1.0 339,539 - -0.3 339,549 + +0.8 339,549 + -3.6 339,549 + -3.8 339,549 + -2.0 339,549 + -1.5 339,549 + -0.8 339,549 + -1.0 339,549 + -1.8 339,550 - -2.6 339,550 - -2.0 339,550 - -2.3 339,550 - -4.3 339,550 - -2.5 339,550 - -2.2 339,550 - -2.5 339,550 - +0.2 339,550 - -1.2 339,551 + -3.2 339,552 - -2.9 339,552 - -1.5 339,552 - -1.0 339,552 - -2.5 339,803 + -2.6 339,804 - -2.6 339,804 - -1.8 339,812 + -1.8 339,905 + mET2 OKGIIK_01510 0.12 -4.2 339,905 + mET2 OKGIIK_01510 0.12 -0.8 339,905 + mET2 OKGIIK_01510 0.12 -3.0 339,906 - mET2 OKGIIK_01510 0.12 -2.9 339,906 - mET2 OKGIIK_01510 0.12 -4.0 339,906 - mET2 OKGIIK_01510 0.12 -0.2 339,906 - mET2 OKGIIK_01510 0.12 +0.8 339,906 - mET2 OKGIIK_01510 0.12 -0.2 339,906 - mET2 OKGIIK_01510 0.12 -0.8 339,906 - mET2 OKGIIK_01510 0.12 -2.5 339,909 + mET2 OKGIIK_01510 0.13 -0.8 339,909 + mET2 OKGIIK_01510 0.13 -4.5 339,910 - mET2 OKGIIK_01510 0.13 -0.2 339,910 - mET2 OKGIIK_01510 0.13 -2.8 339,910 - mET2 OKGIIK_01510 0.13 -0.8 339,910 - mET2 OKGIIK_01510 0.13 -1.3 339,942 + mET2 OKGIIK_01510 0.16 -1.1 339,942 + mET2 OKGIIK_01510 0.16 -1.8 339,942 + mET2 OKGIIK_01510 0.16 -1.5 339,942 + mET2 OKGIIK_01510 0.16 -2.5 339,942 + mET2 OKGIIK_01510 0.16 -0.2 339,942 + mET2 OKGIIK_01510 0.16 -4.0 339,942 + mET2 OKGIIK_01510 0.16 -1.6 339,942 + mET2 OKGIIK_01510 0.16 -1.2 339,942 + mET2 OKGIIK_01510 0.16 -2.5 339,942 + mET2 OKGIIK_01510 0.16 -2.2 339,943 - mET2 OKGIIK_01510 0.16 -2.3 339,943 - mET2 OKGIIK_01510 0.16 -1.2 339,943 - mET2 OKGIIK_01510 0.16 -2.6 339,943 - mET2 OKGIIK_01510 0.16 -2.2 339,943 - mET2 OKGIIK_01510 0.16 -2.6 339,943 - mET2 OKGIIK_01510 0.16 -2.5 339,943 - mET2 OKGIIK_01510 0.16 -4.2 339,943 - mET2 OKGIIK_01510 0.16 -4.5 339,943 - mET2 OKGIIK_01510 0.16 -2.2 339,943 - mET2 OKGIIK_01510 0.16 -0.2 339,943 - mET2 OKGIIK_01510 0.16 -1.5 339,943 - mET2 OKGIIK_01510 0.16 -3.8 339,943 - mET2 OKGIIK_01510 0.16 -1.2 340,233 + mET2 OKGIIK_01510 0.44 -1.5 340,233 + mET2 OKGIIK_01510 0.44 -1.8 340,234 - mET2 OKGIIK_01510 0.44 -0.2 340,234 - mET2 OKGIIK_01510 0.44 -3.8 340,434 + mET2 OKGIIK_01510 0.64 -1.5 340,434 + mET2 OKGIIK_01510 0.64 -1.8 340,434 + mET2 OKGIIK_01510 0.64 -0.8 340,435 - mET2 OKGIIK_01510 0.64 -2.0 340,435 - mET2 OKGIIK_01510 0.64 -2.9 340,518 + mET2 OKGIIK_01510 0.72 -0.8 340,518 + mET2 OKGIIK_01510 0.72 -4.1 340,518 + mET2 OKGIIK_01510 0.72 -2.6 340,518 + mET2 OKGIIK_01510 0.72 -1.2 340,518 + mET2 OKGIIK_01510 0.72 +0.8 340,518 + mET2 OKGIIK_01510 0.72 -3.1 340,519 - mET2 OKGIIK_01510 0.72 -3.1 340,519 - mET2 OKGIIK_01510 0.72 -1.8 340,519 - mET2 OKGIIK_01510 0.72 +0.8 340,806 + -0.2 340,807 - -1.0 340,807 - -0.2 340,807 - -0.2 340,849 - -1.0 340,917 + -2.2 340,917 + -0.8 340,918 - -0.6 341,013 + -1.8 341,013 + -4.0 341,092 + -1.8 341,092 + -3.7 341,092 + -1.8 341,092 + -2.8 341,092 + -2.3 341,092 + -2.2 341,092 + -2.2 341,093 - -1.2 341,093 - -1.5 341,093 - -1.5 341,093 - -0.8 341,093 - -0.5 341,093 - -0.2 341,093 - -0.5 341,093 - -2.5 341,093 - -1.5 341,093 - -1.4 341,093 - -2.0 341,125 + metB OKGIIK_01515 0.11 -0.2 341,125 + metB OKGIIK_01515 0.11 -2.2 341,126 - metB OKGIIK_01515 0.11 -2.6 341,126 - metB OKGIIK_01515 0.11 -2.3 341,126 - metB OKGIIK_01515 0.11 -0.8 341,126 - metB OKGIIK_01515 0.11 -3.1 341,126 - metB OKGIIK_01515 0.11 -3.3 341,131 + metB OKGIIK_01515 0.12 -2.8 341,131 + metB OKGIIK_01515 0.12 -1.2 341,132 - metB OKGIIK_01515 0.12 -0.2 341,132 - metB OKGIIK_01515 0.12 -2.0 341,132 - metB OKGIIK_01515 0.12 -3.3 341,293 + metB OKGIIK_01515 0.25 -0.2 341,414 + metB OKGIIK_01515 0.36 -0.2 341,415 - metB OKGIIK_01515 0.36 -2.2 341,415 - metB OKGIIK_01515 0.36 -0.2 341,415 - metB OKGIIK_01515 0.36 -2.0 341,587 + metB OKGIIK_01515 0.50 -2.8 341,587 + metB OKGIIK_01515 0.50 -2.2 341,587 + metB OKGIIK_01515 0.50 -2.6 341,587 + metB OKGIIK_01515 0.50 -3.2 341,587 + metB OKGIIK_01515 0.50 -1.8 341,587 + metB OKGIIK_01515 0.50 -1.2 341,587 + metB OKGIIK_01515 0.50 -1.5 341,587 + metB OKGIIK_01515 0.50 -3.9 341,587 + metB OKGIIK_01515 0.50 -3.1 341,587 + metB OKGIIK_01515 0.50 -2.2 341,587 + metB OKGIIK_01515 0.50 -2.5 341,587 + metB OKGIIK_01515 0.50 -1.5 341,587 + metB OKGIIK_01515 0.50 -2.8 341,587 + metB OKGIIK_01515 0.50 -3.0 341,587 + metB OKGIIK_01515 0.50 -1.2 341,587 + metB OKGIIK_01515 0.50 -1.9 341,587 + metB OKGIIK_01515 0.50 -0.2 341,587 + metB OKGIIK_01515 0.50 -2.0 341,588 - metB OKGIIK_01515 0.50 -2.7 341,588 - metB OKGIIK_01515 0.50 -1.0 341,588 - metB OKGIIK_01515 0.50 -1.2 341,588 - metB OKGIIK_01515 0.50 -1.2 341,588 - metB OKGIIK_01515 0.50 -1.8 341,588 - metB OKGIIK_01515 0.50 -1.2 341,588 - metB OKGIIK_01515 0.50 -0.2 341,588 - metB OKGIIK_01515 0.50 -2.0 341,588 - metB OKGIIK_01515 0.50 -1.2 341,588 - metB OKGIIK_01515 0.50 -3.3 341,588 - metB OKGIIK_01515 0.50 -2.3 341,588 - metB OKGIIK_01515 0.50 -0.9 341,588 - metB OKGIIK_01515 0.50 -2.0 341,588 - metB OKGIIK_01515 0.50 -2.2 341,588 - metB OKGIIK_01515 0.50 -0.4 341,588 - metB OKGIIK_01515 0.50 -3.0 341,588 - metB OKGIIK_01515 0.50 -2.8 341,588 - metB OKGIIK_01515 0.50 -3.0 341,588 - metB OKGIIK_01515 0.50 -0.9 341,588 - metB OKGIIK_01515 0.50 -2.2 341,588 - metB OKGIIK_01515 0.50 -1.5 341,707 + metB OKGIIK_01515 0.60 -1.0 341,707 + metB OKGIIK_01515 0.60 -0.8 341,707 + metB OKGIIK_01515 0.60 -0.2 341,707 + metB OKGIIK_01515 0.60 -3.9 341,707 + metB OKGIIK_01515 0.60 -2.5 341,707 + metB OKGIIK_01515 0.60 -0.8 341,707 + metB OKGIIK_01515 0.60 -2.2 341,707 + metB OKGIIK_01515 0.60 -2.8 341,707 + metB OKGIIK_01515 0.60 -2.8 341,707 + metB OKGIIK_01515 0.60 -3.0 341,707 + metB OKGIIK_01515 0.60 -1.7 341,707 + metB OKGIIK_01515 0.60 -0.2 341,707 + metB OKGIIK_01515 0.60 -4.5 341,707 + metB OKGIIK_01515 0.60 -2.3 341,707 + metB OKGIIK_01515 0.60 -2.0 341,707 + metB OKGIIK_01515 0.60 -3.9 341,707 + metB OKGIIK_01515 0.60 -0.8 341,707 + metB OKGIIK_01515 0.60 -3.7 341,707 + metB OKGIIK_01515 0.60 -4.0 341,708 - metB OKGIIK_01515 0.60 -1.8 341,708 - metB OKGIIK_01515 0.60 -2.0 341,708 - metB OKGIIK_01515 0.60 -2.5 341,708 - metB OKGIIK_01515 0.60 -2.6 341,708 - metB OKGIIK_01515 0.60 -1.2 341,708 - metB OKGIIK_01515 0.60 -2.2 341,708 - metB OKGIIK_01515 0.60 -2.0 341,708 - metB OKGIIK_01515 0.60 -1.2 341,708 - metB OKGIIK_01515 0.60 -1.5 341,708 - metB OKGIIK_01515 0.60 -2.5 341,708 - metB OKGIIK_01515 0.60 -0.9 341,708 - metB OKGIIK_01515 0.60 -0.8 341,708 - metB OKGIIK_01515 0.60 -2.6
Or see this region's nucleotide sequence