Experiment: NLDM_defined_nocarbon with D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fixB and fixA are separated by 112 nucleotides fixA and OKGIIK_01265 are separated by 117 nucleotides
OKGIIK_01255: fixB - electron transfer flavoprotein subunit alpha, at 274,961 to 275,902
fixB
OKGIIK_01260: fixA - EtfB protein, at 276,015 to 276,761
fixA
OKGIIK_01265: OKGIIK_01265 - Glycosyltransferase WbsX, at 276,879 to 278,939
_01265
Position (kb) 276
277 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 275.053 kb on + strand at 275.053 kb on + strand at 275.071 kb on + strand, within fixB at 275.071 kb on + strand, within fixB at 275.072 kb on - strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.131 kb on + strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.515 kb on - strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.795 kb on + strand, within fixB at 275.795 kb on + strand, within fixB at 275.796 kb on - strand, within fixB at 275.796 kb on - strand, within fixB at 275.796 kb on - strand, within fixB at 275.796 kb on - strand, within fixB at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.003 kb on - strand at 276.016 kb on + strand at 276.016 kb on + strand at 276.103 kb on + strand, within fixA at 276.103 kb on + strand, within fixA at 276.724 kb on + strand at 276.724 kb on + strand at 276.724 kb on + strand at 276.724 kb on + strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.742 kb on + strand at 276.743 kb on - strand at 276.815 kb on + strand at 276.815 kb on + strand at 276.815 kb on + strand at 276.816 kb on - strand at 276.816 kb on - strand at 276.816 kb on - strand at 276.816 kb on - strand at 276.816 kb on - strand at 276.835 kb on + strand at 276.835 kb on + strand at 276.835 kb on + strand at 276.835 kb on + strand at 276.836 kb on - strand at 276.836 kb on - strand at 276.836 kb on - strand at 276.898 kb on + strand at 276.899 kb on - strand at 276.899 kb on - strand at 276.899 kb on - strand at 276.904 kb on + strand at 277.083 kb on + strand at 277.083 kb on + strand at 277.083 kb on + strand at 277.083 kb on + strand at 277.083 kb on + strand at 277.084 kb on - strand at 277.132 kb on + strand, within OKGIIK_01265 at 277.132 kb on + strand, within OKGIIK_01265 at 277.133 kb on - strand, within OKGIIK_01265 at 277.133 kb on - strand, within OKGIIK_01265 at 277.133 kb on - strand, within OKGIIK_01265 at 277.133 kb on - strand, within OKGIIK_01265 at 277.174 kb on + strand, within OKGIIK_01265 at 277.174 kb on + strand, within OKGIIK_01265 at 277.175 kb on - strand, within OKGIIK_01265 at 277.175 kb on - strand, within OKGIIK_01265 at 277.175 kb on - strand, within OKGIIK_01265 at 277.175 kb on - strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.482 kb on + strand, within OKGIIK_01265 at 277.482 kb on + strand, within OKGIIK_01265 at 277.483 kb on - strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose remove 275,053 + -1.2 275,053 + -0.2 275,071 + fixB OKGIIK_01255 0.12 -0.2 275,071 + fixB OKGIIK_01255 0.12 +0.8 275,072 - fixB OKGIIK_01255 0.12 -1.8 275,130 + fixB OKGIIK_01255 0.18 -2.0 275,130 + fixB OKGIIK_01255 0.18 -2.0 275,130 + fixB OKGIIK_01255 0.18 -0.2 275,130 + fixB OKGIIK_01255 0.18 -1.2 275,130 + fixB OKGIIK_01255 0.18 -4.1 275,130 + fixB OKGIIK_01255 0.18 -2.3 275,130 + fixB OKGIIK_01255 0.18 -0.5 275,130 + fixB OKGIIK_01255 0.18 -1.2 275,130 + fixB OKGIIK_01255 0.18 -2.3 275,130 + fixB OKGIIK_01255 0.18 -1.5 275,130 + fixB OKGIIK_01255 0.18 -1.2 275,130 + fixB OKGIIK_01255 0.18 -2.6 275,130 + fixB OKGIIK_01255 0.18 -1.2 275,130 + fixB OKGIIK_01255 0.18 -1.5 275,130 + fixB OKGIIK_01255 0.18 -1.0 275,130 + fixB OKGIIK_01255 0.18 -2.5 275,130 + fixB OKGIIK_01255 0.18 -1.5 275,130 + fixB OKGIIK_01255 0.18 +0.8 275,130 + fixB OKGIIK_01255 0.18 -1.5 275,131 + fixB OKGIIK_01255 0.18 -1.5 275,131 - fixB OKGIIK_01255 0.18 -1.2 275,131 - fixB OKGIIK_01255 0.18 -2.9 275,131 - fixB OKGIIK_01255 0.18 -1.6 275,131 - fixB OKGIIK_01255 0.18 -0.5 275,131 - fixB OKGIIK_01255 0.18 -2.0 275,131 - fixB OKGIIK_01255 0.18 -1.5 275,131 - fixB OKGIIK_01255 0.18 -0.8 275,131 - fixB OKGIIK_01255 0.18 -0.8 275,131 - fixB OKGIIK_01255 0.18 -3.1 275,131 - fixB OKGIIK_01255 0.18 +0.2 275,515 - fixB OKGIIK_01255 0.59 -0.2 275,636 + fixB OKGIIK_01255 0.72 -1.2 275,636 + fixB OKGIIK_01255 0.72 -2.9 275,636 + fixB OKGIIK_01255 0.72 -0.6 275,636 + fixB OKGIIK_01255 0.72 -2.5 275,636 + fixB OKGIIK_01255 0.72 -1.5 275,636 + fixB OKGIIK_01255 0.72 -2.6 275,636 + fixB OKGIIK_01255 0.72 -0.8 275,636 + fixB OKGIIK_01255 0.72 -0.2 275,636 + fixB OKGIIK_01255 0.72 -2.0 275,636 + fixB OKGIIK_01255 0.72 -1.5 275,636 + fixB OKGIIK_01255 0.72 -0.8 275,636 + fixB OKGIIK_01255 0.72 -2.9 275,636 + fixB OKGIIK_01255 0.72 -2.0 275,636 + fixB OKGIIK_01255 0.72 -1.2 275,636 + fixB OKGIIK_01255 0.72 -0.2 275,636 + fixB OKGIIK_01255 0.72 -2.0 275,636 + fixB OKGIIK_01255 0.72 -1.8 275,636 + fixB OKGIIK_01255 0.72 -2.0 275,636 + fixB OKGIIK_01255 0.72 -1.5 275,636 + fixB OKGIIK_01255 0.72 -2.6 275,637 - fixB OKGIIK_01255 0.72 -2.3 275,637 - fixB OKGIIK_01255 0.72 -1.5 275,637 - fixB OKGIIK_01255 0.72 -1.8 275,637 - fixB OKGIIK_01255 0.72 -0.2 275,637 - fixB OKGIIK_01255 0.72 -4.1 275,637 - fixB OKGIIK_01255 0.72 -2.0 275,637 - fixB OKGIIK_01255 0.72 -3.5 275,637 - fixB OKGIIK_01255 0.72 -1.5 275,637 - fixB OKGIIK_01255 0.72 -3.2 275,637 - fixB OKGIIK_01255 0.72 -1.8 275,637 - fixB OKGIIK_01255 0.72 -2.5 275,637 - fixB OKGIIK_01255 0.72 -2.3 275,637 - fixB OKGIIK_01255 0.72 -2.0 275,637 - fixB OKGIIK_01255 0.72 -0.8 275,637 - fixB OKGIIK_01255 0.72 -1.0 275,637 - fixB OKGIIK_01255 0.72 -1.8 275,637 - fixB OKGIIK_01255 0.72 -1.8 275,637 - fixB OKGIIK_01255 0.72 -1.8 275,795 + fixB OKGIIK_01255 0.89 +0.8 275,795 + fixB OKGIIK_01255 0.89 -2.3 275,796 - fixB OKGIIK_01255 0.89 -1.8 275,796 - fixB OKGIIK_01255 0.89 -2.8 275,796 - fixB OKGIIK_01255 0.89 -2.9 275,796 - fixB OKGIIK_01255 0.89 -2.0 275,927 - -0.2 275,927 - -2.2 275,927 - -0.2 275,927 - -0.8 275,927 - -1.2 275,927 - -0.2 275,927 - -3.3 275,927 - -0.0 275,998 + -1.8 275,998 + -0.4 275,998 + -0.2 275,998 + -1.8 275,998 + -3.0 275,998 + +0.8 275,998 + +0.8 275,998 + -2.6 275,998 + +0.0 275,998 + -0.2 275,998 + -1.8 275,998 + -1.5 275,998 + -0.8 275,998 + -1.8 275,998 + -2.0 275,998 + -1.8 276,002 + -1.5 276,002 + -1.3 276,002 + -2.0 276,002 + +1.3 276,002 + -1.8 276,002 + -0.2 276,002 + -0.8 276,002 + -0.5 276,002 + -1.3 276,002 + -0.8 276,003 - -0.9 276,016 + -0.2 276,016 + -2.2 276,103 + fixA OKGIIK_01260 0.12 +0.8 276,103 + fixA OKGIIK_01260 0.12 -3.8 276,724 + -1.5 276,724 + -1.5 276,724 + -1.5 276,724 + -1.8 276,725 - -2.0 276,725 - -1.2 276,725 - -1.8 276,725 - -1.9 276,725 - +0.8 276,725 - -2.5 276,725 - -2.8 276,742 + -0.8 276,743 - -1.5 276,815 + -1.8 276,815 + -0.4 276,815 + +1.2 276,816 - +0.8 276,816 - -2.4 276,816 - +0.1 276,816 - -0.3 276,816 - -1.2 276,835 + -0.5 276,835 + +1.0 276,835 + +0.4 276,835 + +0.5 276,836 - +1.2 276,836 - +0.7 276,836 - +1.2 276,898 + +0.1 276,899 - -0.4 276,899 - +2.4 276,899 - -0.5 276,904 + -0.4 277,083 + +0.0 277,083 + +0.1 277,083 + -1.2 277,083 + +0.7 277,083 + -0.8 277,084 - -0.2 277,132 + OKGIIK_01265 0.12 +0.1 277,132 + OKGIIK_01265 0.12 +1.4 277,133 - OKGIIK_01265 0.12 +0.8 277,133 - OKGIIK_01265 0.12 +0.4 277,133 - OKGIIK_01265 0.12 +1.0 277,133 - OKGIIK_01265 0.12 +0.2 277,174 + OKGIIK_01265 0.14 +0.3 277,174 + OKGIIK_01265 0.14 -0.2 277,175 - OKGIIK_01265 0.14 +2.6 277,175 - OKGIIK_01265 0.14 +0.1 277,175 - OKGIIK_01265 0.14 -0.2 277,175 - OKGIIK_01265 0.14 +0.6 277,204 + OKGIIK_01265 0.16 -0.9 277,204 + OKGIIK_01265 0.16 +0.5 277,204 + OKGIIK_01265 0.16 +1.8 277,204 + OKGIIK_01265 0.16 -0.2 277,204 + OKGIIK_01265 0.16 -0.2 277,204 + OKGIIK_01265 0.16 -0.8 277,204 + OKGIIK_01265 0.16 +1.6 277,204 + OKGIIK_01265 0.16 +1.6 277,204 + OKGIIK_01265 0.16 -1.3 277,204 + OKGIIK_01265 0.16 +0.7 277,204 + OKGIIK_01265 0.16 +0.8 277,204 + OKGIIK_01265 0.16 -0.8 277,205 - OKGIIK_01265 0.16 +1.2 277,205 - OKGIIK_01265 0.16 +0.7 277,205 - OKGIIK_01265 0.16 +0.7 277,205 - OKGIIK_01265 0.16 +2.1 277,205 - OKGIIK_01265 0.16 +1.1 277,205 - OKGIIK_01265 0.16 -1.0 277,205 - OKGIIK_01265 0.16 -2.8 277,205 - OKGIIK_01265 0.16 +0.1 277,205 - OKGIIK_01265 0.16 +0.4 277,205 - OKGIIK_01265 0.16 +1.1 277,305 + OKGIIK_01265 0.21 +3.1 277,305 + OKGIIK_01265 0.21 -0.2 277,305 + OKGIIK_01265 0.21 -1.3 277,305 + OKGIIK_01265 0.21 -2.5 277,305 + OKGIIK_01265 0.21 +0.5 277,305 + OKGIIK_01265 0.21 +0.7 277,306 - OKGIIK_01265 0.21 +0.8 277,306 - OKGIIK_01265 0.21 -1.9 277,306 - OKGIIK_01265 0.21 +0.8 277,306 - OKGIIK_01265 0.21 +1.8 277,306 - OKGIIK_01265 0.21 -0.8 277,482 + OKGIIK_01265 0.29 +0.5 277,482 + OKGIIK_01265 0.29 +0.0 277,483 - OKGIIK_01265 0.29 -0.4 277,697 + OKGIIK_01265 0.40 -0.4 277,697 + OKGIIK_01265 0.40 -2.2 277,697 + OKGIIK_01265 0.40 -1.2 277,697 + OKGIIK_01265 0.40 -0.3 277,697 + OKGIIK_01265 0.40 -1.5 277,697 + OKGIIK_01265 0.40 +0.8 277,697 + OKGIIK_01265 0.40 -1.2 277,698 - OKGIIK_01265 0.40 -0.4 277,698 - OKGIIK_01265 0.40 +0.9 277,698 - OKGIIK_01265 0.40 +1.4 277,698 - OKGIIK_01265 0.40 -0.8 277,698 - OKGIIK_01265 0.40 +0.0
Or see this region's nucleotide sequence