Experiment: NLDM_defined_nocarbon with D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliM and fliN overlap by 4 nucleotides fliN and fliO are separated by 137 nucleotides fliO and fliP overlap by 4 nucleotides fliP and fliQ are separated by 763 nucleotides
OKGIIK_02780: fliM - flagellar motor switch protein FliM, at 642,253 to 643,269
fliM
OKGIIK_02785: fliN - flagellar motor switch protein FliN, at 643,266 to 643,613
fliN
OKGIIK_02790: fliO - flagellar biosynthetic protein FliO, at 643,751 to 644,119
fliO
OKGIIK_02795: fliP - flagellar type III secretion system pore protein FliP, at 644,116 to 644,862
fliP
OKGIIK_02800: fliQ - flagellar biosynthesis protein FliQ, at 645,626 to 645,895
fliQ
Position (kb) 644
645 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 643.132 kb on + strand, within fliM at 643.165 kb on + strand, within fliM at 643.166 kb on - strand, within fliM at 643.277 kb on + strand at 643.277 kb on + strand at 643.277 kb on + strand at 643.277 kb on + strand at 643.277 kb on + strand at 643.278 kb on - strand at 643.278 kb on - strand at 643.278 kb on - strand at 643.278 kb on - strand at 643.739 kb on + strand at 643.739 kb on + strand at 643.740 kb on - strand at 643.742 kb on - strand at 643.746 kb on + strand at 643.747 kb on - strand at 643.747 kb on - strand at 643.747 kb on - strand at 644.027 kb on + strand, within fliO at 644.027 kb on + strand, within fliO at 644.027 kb on + strand, within fliO at 644.027 kb on + strand, within fliO at 644.027 kb on + strand, within fliO at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.470 kb on + strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.471 kb on - strand, within fliP at 644.475 kb on - strand, within fliP at 644.600 kb on - strand, within fliP at 644.600 kb on - strand, within fliP at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.890 kb on + strand at 644.890 kb on + strand at 644.890 kb on + strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 645.152 kb on + strand at 645.198 kb on - strand at 645.198 kb on - strand at 645.198 kb on - strand at 645.198 kb on - strand at 645.198 kb on - strand at 645.198 kb on - strand at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.669 kb on - strand, within fliQ at 645.669 kb on - strand, within fliQ at 645.669 kb on - strand, within fliQ at 645.669 kb on - strand, within fliQ at 645.669 kb on - strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose remove 643,132 + fliM OKGIIK_02780 0.86 +2.8 643,165 + fliM OKGIIK_02780 0.90 +0.2 643,166 - fliM OKGIIK_02780 0.90 +0.1 643,277 + -1.0 643,277 + +0.1 643,277 + +0.8 643,277 + +1.2 643,277 + +0.2 643,278 - +1.8 643,278 - -0.9 643,278 - -1.0 643,278 - -0.3 643,739 + +1.5 643,739 + +1.3 643,740 - +1.7 643,742 - -0.9 643,746 + +1.5 643,747 - +0.7 643,747 - -1.4 643,747 - -1.9 644,027 + fliO OKGIIK_02790 0.75 +1.7 644,027 + fliO OKGIIK_02790 0.75 +0.4 644,027 + fliO OKGIIK_02790 0.75 +1.5 644,027 + fliO OKGIIK_02790 0.75 +1.3 644,027 + fliO OKGIIK_02790 0.75 -0.2 644,470 + fliP OKGIIK_02795 0.47 -0.3 644,470 + fliP OKGIIK_02795 0.47 +2.4 644,470 + fliP OKGIIK_02795 0.47 +2.7 644,470 + fliP OKGIIK_02795 0.47 +2.6 644,470 + fliP OKGIIK_02795 0.47 -0.3 644,470 + fliP OKGIIK_02795 0.47 +1.5 644,470 + fliP OKGIIK_02795 0.47 -0.3 644,470 + fliP OKGIIK_02795 0.47 -1.6 644,470 + fliP OKGIIK_02795 0.47 +0.3 644,470 + fliP OKGIIK_02795 0.47 +2.5 644,470 + fliP OKGIIK_02795 0.47 +3.0 644,470 + fliP OKGIIK_02795 0.47 +1.1 644,470 + fliP OKGIIK_02795 0.47 +1.1 644,470 + fliP OKGIIK_02795 0.47 +0.3 644,470 + fliP OKGIIK_02795 0.47 +1.3 644,470 + fliP OKGIIK_02795 0.47 -0.1 644,471 - fliP OKGIIK_02795 0.48 +2.0 644,471 - fliP OKGIIK_02795 0.48 +2.0 644,471 - fliP OKGIIK_02795 0.48 +0.3 644,471 - fliP OKGIIK_02795 0.48 +0.7 644,471 - fliP OKGIIK_02795 0.48 +1.1 644,471 - fliP OKGIIK_02795 0.48 +1.3 644,471 - fliP OKGIIK_02795 0.48 +0.8 644,471 - fliP OKGIIK_02795 0.48 +1.5 644,471 - fliP OKGIIK_02795 0.48 -0.3 644,471 - fliP OKGIIK_02795 0.48 +1.5 644,471 - fliP OKGIIK_02795 0.48 +2.7 644,475 - fliP OKGIIK_02795 0.48 +0.0 644,600 - fliP OKGIIK_02795 0.65 +1.3 644,600 - fliP OKGIIK_02795 0.65 +3.4 644,854 + +0.9 644,854 + +3.6 644,854 + +0.5 644,854 + +0.4 644,854 + +1.7 644,854 + -0.3 644,854 + +1.1 644,854 + +0.1 644,854 + +0.7 644,854 + +1.5 644,854 + +2.1 644,854 + -0.0 644,854 + -0.9 644,855 - -1.5 644,855 - -0.3 644,855 - +0.0 644,855 - +1.9 644,855 - -1.6 644,855 - -2.5 644,855 - +0.3 644,855 - -0.3 644,855 - -1.2 644,855 - +1.3 644,855 - +0.5 644,855 - -3.2 644,855 - -0.3 644,855 - +0.7 644,855 - +0.7 644,855 - -0.9 644,890 + -2.3 644,890 + +1.2 644,890 + +1.7 644,891 - -0.4 644,891 - -1.4 644,891 - -0.6 644,891 - -0.2 644,891 - +0.1 644,891 - -0.7 644,891 - +0.4 644,891 - -0.9 644,891 - +0.5 644,891 - -2.1 645,152 + +0.1 645,198 - +0.7 645,198 - -2.6 645,198 - +1.3 645,198 - +4.7 645,198 - +0.9 645,198 - -0.9 645,668 + fliQ OKGIIK_02800 0.16 +0.5 645,668 + fliQ OKGIIK_02800 0.16 -1.6 645,668 + fliQ OKGIIK_02800 0.16 +0.8 645,668 + fliQ OKGIIK_02800 0.16 -0.5 645,668 + fliQ OKGIIK_02800 0.16 +0.7 645,668 + fliQ OKGIIK_02800 0.16 -1.3 645,668 + fliQ OKGIIK_02800 0.16 +0.5 645,668 + fliQ OKGIIK_02800 0.16 +0.2 645,668 + fliQ OKGIIK_02800 0.16 +1.2 645,668 + fliQ OKGIIK_02800 0.16 +1.2 645,669 - fliQ OKGIIK_02800 0.16 +0.7 645,669 - fliQ OKGIIK_02800 0.16 +1.7 645,669 - fliQ OKGIIK_02800 0.16 +1.5 645,669 - fliQ OKGIIK_02800 0.16 +1.7 645,669 - fliQ OKGIIK_02800 0.16 -1.3 645,851 + fliQ OKGIIK_02800 0.83 +1.6 645,851 + fliQ OKGIIK_02800 0.83 +2.1 645,851 + fliQ OKGIIK_02800 0.83 +0.5 645,851 + fliQ OKGIIK_02800 0.83 +1.1 645,851 + fliQ OKGIIK_02800 0.83 -0.9 645,851 + fliQ OKGIIK_02800 0.83 +1.1 645,851 + fliQ OKGIIK_02800 0.83 -0.5 645,851 + fliQ OKGIIK_02800 0.83 -0.1 645,851 + fliQ OKGIIK_02800 0.83 +0.9 645,851 + fliQ OKGIIK_02800 0.83 +1.4 645,851 + fliQ OKGIIK_02800 0.83 +2.4 645,851 + fliQ OKGIIK_02800 0.83 +0.5 645,851 + fliQ OKGIIK_02800 0.83 -1.7 645,851 + fliQ OKGIIK_02800 0.83 +1.7 645,851 + fliQ OKGIIK_02800 0.83 +2.5 645,851 + fliQ OKGIIK_02800 0.83 -0.3 645,851 + fliQ OKGIIK_02800 0.83 +0.6 645,851 + fliQ OKGIIK_02800 0.83 +1.0 645,851 + fliQ OKGIIK_02800 0.83 +1.1 645,851 + fliQ OKGIIK_02800 0.83 -0.4 645,851 + fliQ OKGIIK_02800 0.83 +0.3 645,851 + fliQ OKGIIK_02800 0.83 +0.8 645,851 + fliQ OKGIIK_02800 0.83 +0.0 645,852 - fliQ OKGIIK_02800 0.84 +2.7 645,852 - fliQ OKGIIK_02800 0.84 +3.0 645,852 - fliQ OKGIIK_02800 0.84 +1.9 645,852 - fliQ OKGIIK_02800 0.84 +0.1 645,852 - fliQ OKGIIK_02800 0.84 +0.5 645,852 - fliQ OKGIIK_02800 0.84 -0.9 645,852 - fliQ OKGIIK_02800 0.84 +3.0 645,852 - fliQ OKGIIK_02800 0.84 +0.5 645,852 - fliQ OKGIIK_02800 0.84 +0.8 645,852 - fliQ OKGIIK_02800 0.84 +0.3 645,852 - fliQ OKGIIK_02800 0.84 +2.1 645,852 - fliQ OKGIIK_02800 0.84 +1.4 645,852 - fliQ OKGIIK_02800 0.84 +1.7 645,852 - fliQ OKGIIK_02800 0.84 +0.7 645,852 - fliQ OKGIIK_02800 0.84 -0.3 645,852 - fliQ OKGIIK_02800 0.84 +1.0 645,852 - fliQ OKGIIK_02800 0.84 +0.9 645,852 - fliQ OKGIIK_02800 0.84 -1.3 645,852 - fliQ OKGIIK_02800 0.84 +1.7
Or see this region's nucleotide sequence