Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07040

Experiment: NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlysS and OKGIIK_07030 are separated by 3 nucleotidesOKGIIK_07030 and OKGIIK_07035 overlap by 4 nucleotidesOKGIIK_07035 and smc are separated by 143 nucleotidessmc and zipA are separated by 10 nucleotideszipA and msrA are separated by 8 nucleotides OKGIIK_07025: lysS - lysine--tRNA ligase, at 1,556,456 to 1,557,991 lysS OKGIIK_07030: OKGIIK_07030 - YciI family protein, at 1,557,995 to 1,558,294 _07030 OKGIIK_07035: OKGIIK_07035 - BolA family transcriptional regulator, at 1,558,291 to 1,558,545 _07035 OKGIIK_07040: smc - chromosome segregation protein SMC, at 1,558,689 to 1,562,198 smc OKGIIK_07045: zipA - cell division protein ZipA, at 1,562,209 to 1,563,177 zipA OKGIIK_07050: msrA - peptide-methionine (S)-S-oxide reductase, at 1,563,186 to 1,563,695 msrA Position (kb) 1558 1559 1560 1561 1562 1563Strain fitness (log2 ratio) -2 -1 0 1 2at 1558.001 kb on + strandat 1558.001 kb on + strandat 1558.001 kb on + strandat 1558.001 kb on + strandat 1558.001 kb on + strandat 1558.002 kb on - strandat 1558.002 kb on - strandat 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.232 kb on + strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.233 kb on - strand, within OKGIIK_07030at 1558.250 kb on + strand, within OKGIIK_07030at 1558.250 kb on + strand, within OKGIIK_07030at 1558.250 kb on + strand, within OKGIIK_07030at 1558.250 kb on + strand, within OKGIIK_07030at 1558.250 kb on + strand, within OKGIIK_07030at 1558.251 kb on - strand, within OKGIIK_07030at 1558.251 kb on - strand, within OKGIIK_07030at 1558.251 kb on - strand, within OKGIIK_07030at 1558.251 kb on - strand, within OKGIIK_07030at 1558.251 kb on - strand, within OKGIIK_07030at 1558.251 kb on - strand, within OKGIIK_07030at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.483 kb on + strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.484 kb on - strand, within OKGIIK_07035at 1558.543 kb on + strandat 1558.549 kb on - strandat 1558.555 kb on - strandat 1558.556 kb on + strandat 1558.556 kb on + strandat 1558.559 kb on - strandat 1558.564 kb on + strandat 1558.565 kb on - strandat 1558.565 kb on - strandat 1558.576 kb on + strandat 1559.206 kb on - strand, within smcat 1559.568 kb on + strand, within smcat 1559.569 kb on - strand, within smcat 1559.569 kb on - strand, within smcat 1559.894 kb on + strand, within smcat 1559.895 kb on - strand, within smcat 1560.567 kb on + strand, within smcat 1561.269 kb on + strand, within smcat 1561.269 kb on + strand, within smcat 1561.806 kb on + strand, within smcat 1561.806 kb on + strand, within smcat 1562.177 kb on + strandat 1562.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM
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1,558,001 + -0.3
1,558,001 + -0.3
1,558,001 + +0.4
1,558,001 + -1.7
1,558,001 + +0.3
1,558,002 - +1.3
1,558,002 - -0.1
1,558,232 + OKGIIK_07030 0.79 -0.1
1,558,232 + OKGIIK_07030 0.79 +0.9
1,558,232 + OKGIIK_07030 0.79 +0.6
1,558,232 + OKGIIK_07030 0.79 -2.3
1,558,232 + OKGIIK_07030 0.79 -0.6
1,558,232 + OKGIIK_07030 0.79 -0.3
1,558,232 + OKGIIK_07030 0.79 +1.5
1,558,232 + OKGIIK_07030 0.79 +1.1
1,558,232 + OKGIIK_07030 0.79 -0.0
1,558,232 + OKGIIK_07030 0.79 -1.9
1,558,232 + OKGIIK_07030 0.79 +1.9
1,558,232 + OKGIIK_07030 0.79 -1.1
1,558,232 + OKGIIK_07030 0.79 +0.6
1,558,232 + OKGIIK_07030 0.79 -1.3
1,558,232 + OKGIIK_07030 0.79 +0.3
1,558,232 + OKGIIK_07030 0.79 -0.2
1,558,232 + OKGIIK_07030 0.79 +1.4
1,558,232 + OKGIIK_07030 0.79 +0.0
1,558,232 + OKGIIK_07030 0.79 -1.4
1,558,232 + OKGIIK_07030 0.79 -1.7
1,558,232 + OKGIIK_07030 0.79 -1.4
1,558,233 - OKGIIK_07030 0.79 -0.1
1,558,233 - OKGIIK_07030 0.79 -0.7
1,558,233 - OKGIIK_07030 0.79 +0.7
1,558,233 - OKGIIK_07030 0.79 +0.1
1,558,233 - OKGIIK_07030 0.79 +0.9
1,558,233 - OKGIIK_07030 0.79 -2.1
1,558,233 - OKGIIK_07030 0.79 -1.9
1,558,233 - OKGIIK_07030 0.79 -0.7
1,558,233 - OKGIIK_07030 0.79 +0.9
1,558,233 - OKGIIK_07030 0.79 +0.9
1,558,233 - OKGIIK_07030 0.79 -0.1
1,558,233 - OKGIIK_07030 0.79 -1.6
1,558,233 - OKGIIK_07030 0.79 +0.5
1,558,250 + OKGIIK_07030 0.85 +0.9
1,558,250 + OKGIIK_07030 0.85 -0.7
1,558,250 + OKGIIK_07030 0.85 +0.3
1,558,250 + OKGIIK_07030 0.85 -0.1
1,558,250 + OKGIIK_07030 0.85 -0.4
1,558,251 - OKGIIK_07030 0.85 +1.9
1,558,251 - OKGIIK_07030 0.85 +1.2
1,558,251 - OKGIIK_07030 0.85 -1.4
1,558,251 - OKGIIK_07030 0.85 -0.4
1,558,251 - OKGIIK_07030 0.85 -0.4
1,558,251 - OKGIIK_07030 0.85 +0.5
1,558,483 + OKGIIK_07035 0.75 -1.7
1,558,483 + OKGIIK_07035 0.75 -2.5
1,558,483 + OKGIIK_07035 0.75 -0.7
1,558,483 + OKGIIK_07035 0.75 -1.9
1,558,483 + OKGIIK_07035 0.75 -1.9
1,558,483 + OKGIIK_07035 0.75 -2.1
1,558,483 + OKGIIK_07035 0.75 +0.8
1,558,483 + OKGIIK_07035 0.75 -1.1
1,558,483 + OKGIIK_07035 0.75 +0.0
1,558,483 + OKGIIK_07035 0.75 -1.3
1,558,483 + OKGIIK_07035 0.75 -0.7
1,558,483 + OKGIIK_07035 0.75 -0.1
1,558,483 + OKGIIK_07035 0.75 +0.9
1,558,483 + OKGIIK_07035 0.75 -0.6
1,558,483 + OKGIIK_07035 0.75 +1.1
1,558,483 + OKGIIK_07035 0.75 +0.9
1,558,483 + OKGIIK_07035 0.75 -0.7
1,558,483 + OKGIIK_07035 0.75 -1.7
1,558,483 + OKGIIK_07035 0.75 +0.9
1,558,483 + OKGIIK_07035 0.75 +0.3
1,558,483 + OKGIIK_07035 0.75 -0.7
1,558,483 + OKGIIK_07035 0.75 +0.2
1,558,483 + OKGIIK_07035 0.75 -0.7
1,558,483 + OKGIIK_07035 0.75 -0.6
1,558,484 - OKGIIK_07035 0.76 +0.0
1,558,484 - OKGIIK_07035 0.76 +1.9
1,558,484 - OKGIIK_07035 0.76 -1.1
1,558,484 - OKGIIK_07035 0.76 +0.6
1,558,484 - OKGIIK_07035 0.76 +0.0
1,558,484 - OKGIIK_07035 0.76 +0.3
1,558,484 - OKGIIK_07035 0.76 +2.5
1,558,484 - OKGIIK_07035 0.76 -1.1
1,558,484 - OKGIIK_07035 0.76 -1.1
1,558,484 - OKGIIK_07035 0.76 -0.0
1,558,484 - OKGIIK_07035 0.76 -0.7
1,558,484 - OKGIIK_07035 0.76 -0.1
1,558,484 - OKGIIK_07035 0.76 -0.0
1,558,484 - OKGIIK_07035 0.76 +0.5
1,558,484 - OKGIIK_07035 0.76 -1.9
1,558,484 - OKGIIK_07035 0.76 -1.7
1,558,484 - OKGIIK_07035 0.76 -1.9
1,558,484 - OKGIIK_07035 0.76 -2.3
1,558,484 - OKGIIK_07035 0.76 -2.4
1,558,543 + -0.5
1,558,549 - +0.0
1,558,555 - -1.1
1,558,556 + -0.1
1,558,556 + -1.1
1,558,559 - +0.4
1,558,564 + -0.7
1,558,565 - +1.7
1,558,565 - +0.9
1,558,576 + -1.4
1,559,206 - smc OKGIIK_07040 0.15 +0.5
1,559,568 + smc OKGIIK_07040 0.25 +0.9
1,559,569 - smc OKGIIK_07040 0.25 -0.7
1,559,569 - smc OKGIIK_07040 0.25 -1.7
1,559,894 + smc OKGIIK_07040 0.34 -1.4
1,559,895 - smc OKGIIK_07040 0.34 +1.3
1,560,567 + smc OKGIIK_07040 0.54 -2.4
1,561,269 + smc OKGIIK_07040 0.74 -2.1
1,561,269 + smc OKGIIK_07040 0.74 -1.9
1,561,806 + smc OKGIIK_07040 0.89 +0.9
1,561,806 + smc OKGIIK_07040 0.89 -0.1
1,562,177 + +0.3
1,562,178 - +0.9

Or see this region's nucleotide sequence