Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03305

Experiment: NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_03290 and OKGIIK_03295 overlap by 35 nucleotidesOKGIIK_03295 and minE are separated by 91 nucleotidesminE and minD are separated by 5 nucleotidesminD and minC are separated by 37 nucleotidesminC and OKGIIK_03315 overlap by 4 nucleotides OKGIIK_03290: OKGIIK_03290 - Cation transport regulator, at 741,794 to 742,072 _03290 OKGIIK_03295: OKGIIK_03295 - hypothetical protein, at 742,038 to 742,541 _03295 OKGIIK_03300: minE - cell division topological specificity factor MinE, at 742,633 to 742,929 minE OKGIIK_03305: minD - septum site-determining protein MinD, at 742,935 to 743,750 minD OKGIIK_03310: minC - septum site-determining protein MinC, at 743,788 to 744,564 minC OKGIIK_03315: OKGIIK_03315 - hypothetical protein, at 744,561 to 744,824 _03315 Position (kb) 742 743 744Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 741.952 kb on + strand, within OKGIIK_03290at 741.952 kb on + strand, within OKGIIK_03290at 741.952 kb on + strand, within OKGIIK_03290at 741.952 kb on + strand, within OKGIIK_03290at 741.952 kb on + strand, within OKGIIK_03290at 741.952 kb on + strand, within OKGIIK_03290at 741.952 kb on + strand, within OKGIIK_03290at 741.953 kb on - strand, within OKGIIK_03290at 741.953 kb on - strand, within OKGIIK_03290at 741.953 kb on - strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.983 kb on + strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 741.984 kb on - strand, within OKGIIK_03290at 742.056 kb on + strandat 742.057 kb on - strandat 742.057 kb on - strandat 742.138 kb on + strand, within OKGIIK_03295at 742.138 kb on + strand, within OKGIIK_03295at 742.138 kb on + strand, within OKGIIK_03295at 742.139 kb on - strand, within OKGIIK_03295at 742.139 kb on - strand, within OKGIIK_03295at 742.348 kb on + strand, within OKGIIK_03295at 742.349 kb on - strand, within OKGIIK_03295at 743.032 kb on + strand, within minDat 743.033 kb on - strand, within minDat 743.200 kb on + strand, within minDat 743.348 kb on - strand, within minDat 743.348 kb on - strand, within minDat 743.402 kb on - strand, within minDat 743.736 kb on - strandat 743.781 kb on + strandat 743.781 kb on + strandat 743.781 kb on + strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.782 kb on - strandat 743.790 kb on - strandat 743.790 kb on - strandat 743.985 kb on - strand, within minCat 744.065 kb on + strand, within minCat 744.066 kb on - strand, within minCat 744.066 kb on - strand, within minCat 744.066 kb on - strand, within minCat 744.224 kb on + strand, within minCat 744.565 kb on - strandat 744.565 kb on - strandat 744.625 kb on + strand, within OKGIIK_03315at 744.625 kb on + strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.634 kb on - strand, within OKGIIK_03315at 744.634 kb on - strand, within OKGIIK_03315at 744.634 kb on - strand, within OKGIIK_03315at 744.634 kb on - strand, within OKGIIK_03315at 744.634 kb on - strand, within OKGIIK_03315

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM
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741,952 + OKGIIK_03290 0.57 -0.7
741,952 + OKGIIK_03290 0.57 -0.7
741,952 + OKGIIK_03290 0.57 +0.5
741,952 + OKGIIK_03290 0.57 +0.3
741,952 + OKGIIK_03290 0.57 +0.9
741,952 + OKGIIK_03290 0.57 -0.7
741,952 + OKGIIK_03290 0.57 +0.6
741,953 - OKGIIK_03290 0.57 -1.5
741,953 - OKGIIK_03290 0.57 +0.0
741,953 - OKGIIK_03290 0.57 -0.1
741,983 + OKGIIK_03290 0.68 -1.2
741,983 + OKGIIK_03290 0.68 -0.1
741,983 + OKGIIK_03290 0.68 -0.2
741,983 + OKGIIK_03290 0.68 -0.3
741,983 + OKGIIK_03290 0.68 -0.7
741,983 + OKGIIK_03290 0.68 -2.1
741,983 + OKGIIK_03290 0.68 -0.9
741,983 + OKGIIK_03290 0.68 +0.9
741,983 + OKGIIK_03290 0.68 -0.0
741,983 + OKGIIK_03290 0.68 +0.1
741,983 + OKGIIK_03290 0.68 -1.0
741,983 + OKGIIK_03290 0.68 -2.1
741,983 + OKGIIK_03290 0.68 +1.5
741,984 - OKGIIK_03290 0.68 +0.1
741,984 - OKGIIK_03290 0.68 -0.1
741,984 - OKGIIK_03290 0.68 -1.7
741,984 - OKGIIK_03290 0.68 +1.2
741,984 - OKGIIK_03290 0.68 +0.1
741,984 - OKGIIK_03290 0.68 +0.7
741,984 - OKGIIK_03290 0.68 -1.5
741,984 - OKGIIK_03290 0.68 -0.1
741,984 - OKGIIK_03290 0.68 -0.5
741,984 - OKGIIK_03290 0.68 +1.2
741,984 - OKGIIK_03290 0.68 +0.9
741,984 - OKGIIK_03290 0.68 +0.9
741,984 - OKGIIK_03290 0.68 -0.3
741,984 - OKGIIK_03290 0.68 -0.1
742,056 + -0.0
742,057 - -1.8
742,057 - -0.1
742,138 + OKGIIK_03295 0.20 +0.3
742,138 + OKGIIK_03295 0.20 -0.4
742,138 + OKGIIK_03295 0.20 +0.0
742,139 - OKGIIK_03295 0.20 +0.5
742,139 - OKGIIK_03295 0.20 -1.1
742,348 + OKGIIK_03295 0.62 -1.5
742,349 - OKGIIK_03295 0.62 +0.7
743,032 + minD OKGIIK_03305 0.12 +3.2
743,033 - minD OKGIIK_03305 0.12 -1.7
743,200 + minD OKGIIK_03305 0.32 +0.1
743,348 - minD OKGIIK_03305 0.51 -0.7
743,348 - minD OKGIIK_03305 0.51 -2.3
743,402 - minD OKGIIK_03305 0.57 -2.1
743,736 - -1.4
743,781 + -0.7
743,781 + -2.4
743,781 + +0.5
743,782 - +1.9
743,782 - -0.5
743,782 - +0.2
743,782 - -0.5
743,782 - -1.1
743,782 - -0.1
743,782 - +0.1
743,782 - +0.3
743,782 - +1.5
743,782 - +1.5
743,782 - -1.2
743,782 - -0.5
743,782 - +0.9
743,782 - +0.1
743,782 - -0.6
743,782 - +1.7
743,782 - +0.1
743,782 - -0.7
743,790 - +0.7
743,790 - -1.1
743,985 - minC OKGIIK_03310 0.25 -0.9
744,065 + minC OKGIIK_03310 0.36 -2.3
744,066 - minC OKGIIK_03310 0.36 -1.5
744,066 - minC OKGIIK_03310 0.36 -0.7
744,066 - minC OKGIIK_03310 0.36 -0.1
744,224 + minC OKGIIK_03310 0.56 +1.5
744,565 - -2.6
744,565 - +1.6
744,625 + OKGIIK_03315 0.24 +1.5
744,625 + OKGIIK_03315 0.24 +0.4
744,626 - OKGIIK_03315 0.25 +1.1
744,626 - OKGIIK_03315 0.25 -1.0
744,626 - OKGIIK_03315 0.25 +1.0
744,626 - OKGIIK_03315 0.25 +2.7
744,626 - OKGIIK_03315 0.25 +0.1
744,626 - OKGIIK_03315 0.25 -0.7
744,626 - OKGIIK_03315 0.25 +1.6
744,626 - OKGIIK_03315 0.25 +0.9
744,626 - OKGIIK_03315 0.25 -1.9
744,626 - OKGIIK_03315 0.25 +0.7
744,626 - OKGIIK_03315 0.25 +1.9
744,626 - OKGIIK_03315 0.25 -0.6
744,626 - OKGIIK_03315 0.25 +0.9
744,626 - OKGIIK_03315 0.25 -1.1
744,626 - OKGIIK_03315 0.25 -0.3
744,626 - OKGIIK_03315 0.25 +0.5
744,626 - OKGIIK_03315 0.25 -1.5
744,626 - OKGIIK_03315 0.25 -2.5
744,626 - OKGIIK_03315 0.25 -0.6
744,626 - OKGIIK_03315 0.25 -2.3
744,626 - OKGIIK_03315 0.25 -0.5
744,626 - OKGIIK_03315 0.25 -1.7
744,626 - OKGIIK_03315 0.25 -0.7
744,626 - OKGIIK_03315 0.25 +0.5
744,626 - OKGIIK_03315 0.25 -0.3
744,626 - OKGIIK_03315 0.25 +1.9
744,626 - OKGIIK_03315 0.25 -0.6
744,626 - OKGIIK_03315 0.25 -2.3
744,634 - OKGIIK_03315 0.28 +0.9
744,634 - OKGIIK_03315 0.28 -3.2
744,634 - OKGIIK_03315 0.28 +0.1
744,634 - OKGIIK_03315 0.28 -0.1
744,634 - OKGIIK_03315 0.28 -1.1

Or see this region's nucleotide sequence