Experiment: NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fixB and fixA are separated by 112 nucleotides fixA and OKGIIK_01265 are separated by 117 nucleotides
OKGIIK_01255: fixB - electron transfer flavoprotein subunit alpha, at 274,961 to 275,902
fixB
OKGIIK_01260: fixA - EtfB protein, at 276,015 to 276,761
fixA
OKGIIK_01265: OKGIIK_01265 - Glycosyltransferase WbsX, at 276,879 to 278,939
_01265
Position (kb) 276
277 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 275.053 kb on + strand at 275.053 kb on + strand at 275.071 kb on + strand, within fixB at 275.071 kb on + strand, within fixB at 275.072 kb on - strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.130 kb on + strand, within fixB at 275.131 kb on + strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.131 kb on - strand, within fixB at 275.515 kb on - strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.636 kb on + strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.637 kb on - strand, within fixB at 275.795 kb on + strand, within fixB at 275.795 kb on + strand, within fixB at 275.796 kb on - strand, within fixB at 275.796 kb on - strand, within fixB at 275.796 kb on - strand, within fixB at 275.796 kb on - strand, within fixB at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.927 kb on - strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 275.998 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.002 kb on + strand at 276.003 kb on - strand at 276.016 kb on + strand at 276.016 kb on + strand at 276.103 kb on + strand, within fixA at 276.103 kb on + strand, within fixA at 276.724 kb on + strand at 276.724 kb on + strand at 276.724 kb on + strand at 276.724 kb on + strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.725 kb on - strand at 276.742 kb on + strand at 276.743 kb on - strand at 276.815 kb on + strand at 276.815 kb on + strand at 276.815 kb on + strand at 276.816 kb on - strand at 276.816 kb on - strand at 276.816 kb on - strand at 276.816 kb on - strand at 276.816 kb on - strand at 276.835 kb on + strand at 276.835 kb on + strand at 276.835 kb on + strand at 276.835 kb on + strand at 276.836 kb on - strand at 276.836 kb on - strand at 276.836 kb on - strand at 276.898 kb on + strand at 276.899 kb on - strand at 276.899 kb on - strand at 276.899 kb on - strand at 276.904 kb on + strand at 277.083 kb on + strand at 277.083 kb on + strand at 277.083 kb on + strand at 277.083 kb on + strand at 277.083 kb on + strand at 277.084 kb on - strand at 277.132 kb on + strand, within OKGIIK_01265 at 277.132 kb on + strand, within OKGIIK_01265 at 277.133 kb on - strand, within OKGIIK_01265 at 277.133 kb on - strand, within OKGIIK_01265 at 277.133 kb on - strand, within OKGIIK_01265 at 277.133 kb on - strand, within OKGIIK_01265 at 277.174 kb on + strand, within OKGIIK_01265 at 277.174 kb on + strand, within OKGIIK_01265 at 277.175 kb on - strand, within OKGIIK_01265 at 277.175 kb on - strand, within OKGIIK_01265 at 277.175 kb on - strand, within OKGIIK_01265 at 277.175 kb on - strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.204 kb on + strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.205 kb on - strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.305 kb on + strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.306 kb on - strand, within OKGIIK_01265 at 277.482 kb on + strand, within OKGIIK_01265 at 277.482 kb on + strand, within OKGIIK_01265 at 277.483 kb on - strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.697 kb on + strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265 at 277.698 kb on - strand, within OKGIIK_01265
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM remove 275,053 + -1.0 275,053 + -0.0 275,071 + fixB OKGIIK_01255 0.12 -0.0 275,071 + fixB OKGIIK_01255 0.12 +1.0 275,072 - fixB OKGIIK_01255 0.12 -1.6 275,130 + fixB OKGIIK_01255 0.18 -1.8 275,130 + fixB OKGIIK_01255 0.18 -1.8 275,130 + fixB OKGIIK_01255 0.18 -0.0 275,130 + fixB OKGIIK_01255 0.18 +0.6 275,130 + fixB OKGIIK_01255 0.18 -1.6 275,130 + fixB OKGIIK_01255 0.18 -2.2 275,130 + fixB OKGIIK_01255 0.18 -1.3 275,130 + fixB OKGIIK_01255 0.18 -1.0 275,130 + fixB OKGIIK_01255 0.18 -2.2 275,130 + fixB OKGIIK_01255 0.18 +0.3 275,130 + fixB OKGIIK_01255 0.18 -2.0 275,130 + fixB OKGIIK_01255 0.18 -2.5 275,130 + fixB OKGIIK_01255 0.18 -1.0 275,130 + fixB OKGIIK_01255 0.18 -1.3 275,130 + fixB OKGIIK_01255 0.18 -0.8 275,130 + fixB OKGIIK_01255 0.18 -2.3 275,130 + fixB OKGIIK_01255 0.18 -1.3 275,130 + fixB OKGIIK_01255 0.18 -0.0 275,130 + fixB OKGIIK_01255 0.18 -1.3 275,131 + fixB OKGIIK_01255 0.18 -1.3 275,131 - fixB OKGIIK_01255 0.18 -1.0 275,131 - fixB OKGIIK_01255 0.18 -1.7 275,131 - fixB OKGIIK_01255 0.18 -3.0 275,131 - fixB OKGIIK_01255 0.18 -1.3 275,131 - fixB OKGIIK_01255 0.18 -1.8 275,131 - fixB OKGIIK_01255 0.18 -1.3 275,131 - fixB OKGIIK_01255 0.18 -0.6 275,131 - fixB OKGIIK_01255 0.18 -0.6 275,131 - fixB OKGIIK_01255 0.18 -2.9 275,131 - fixB OKGIIK_01255 0.18 -0.6 275,515 - fixB OKGIIK_01255 0.59 -2.0 275,636 + fixB OKGIIK_01255 0.72 -1.0 275,636 + fixB OKGIIK_01255 0.72 -0.7 275,636 + fixB OKGIIK_01255 0.72 -2.5 275,636 + fixB OKGIIK_01255 0.72 -2.3 275,636 + fixB OKGIIK_01255 0.72 -1.3 275,636 + fixB OKGIIK_01255 0.72 -2.2 275,636 + fixB OKGIIK_01255 0.72 -0.6 275,636 + fixB OKGIIK_01255 0.72 +1.0 275,636 + fixB OKGIIK_01255 0.72 -1.8 275,636 + fixB OKGIIK_01255 0.72 -1.7 275,636 + fixB OKGIIK_01255 0.72 -1.6 275,636 + fixB OKGIIK_01255 0.72 -4.3 275,636 + fixB OKGIIK_01255 0.72 -1.8 275,636 + fixB OKGIIK_01255 0.72 -1.0 275,636 + fixB OKGIIK_01255 0.72 -0.0 275,636 + fixB OKGIIK_01255 0.72 -1.8 275,636 + fixB OKGIIK_01255 0.72 -1.6 275,636 + fixB OKGIIK_01255 0.72 -1.8 275,636 + fixB OKGIIK_01255 0.72 -1.3 275,636 + fixB OKGIIK_01255 0.72 -2.5 275,637 - fixB OKGIIK_01255 0.72 -2.2 275,637 - fixB OKGIIK_01255 0.72 -1.3 275,637 - fixB OKGIIK_01255 0.72 -0.6 275,637 - fixB OKGIIK_01255 0.72 -0.0 275,637 - fixB OKGIIK_01255 0.72 -3.9 275,637 - fixB OKGIIK_01255 0.72 -1.8 275,637 - fixB OKGIIK_01255 0.72 -3.3 275,637 - fixB OKGIIK_01255 0.72 -1.3 275,637 - fixB OKGIIK_01255 0.72 -2.4 275,637 - fixB OKGIIK_01255 0.72 -0.0 275,637 - fixB OKGIIK_01255 0.72 -2.3 275,637 - fixB OKGIIK_01255 0.72 -1.2 275,637 - fixB OKGIIK_01255 0.72 -1.8 275,637 - fixB OKGIIK_01255 0.72 -0.6 275,637 - fixB OKGIIK_01255 0.72 -1.8 275,637 - fixB OKGIIK_01255 0.72 -1.6 275,637 - fixB OKGIIK_01255 0.72 -1.6 275,637 - fixB OKGIIK_01255 0.72 -1.6 275,795 + fixB OKGIIK_01255 0.89 +1.0 275,795 + fixB OKGIIK_01255 0.89 -2.2 275,796 - fixB OKGIIK_01255 0.89 -1.6 275,796 - fixB OKGIIK_01255 0.89 -1.6 275,796 - fixB OKGIIK_01255 0.89 -2.7 275,796 - fixB OKGIIK_01255 0.89 -1.8 275,927 - -0.0 275,927 - -2.0 275,927 - -0.0 275,927 - -2.2 275,927 - -1.0 275,927 - -1.0 275,927 - -1.2 275,927 - -0.2 275,998 + -1.6 275,998 + -1.8 275,998 + +1.6 275,998 + -1.6 275,998 + +0.2 275,998 + -0.0 275,998 + +1.0 275,998 + -2.5 275,998 + -0.2 275,998 + -0.0 275,998 + +0.4 275,998 + -0.3 275,998 + +1.0 275,998 + -0.3 275,998 + -1.8 275,998 + -0.3 276,002 + -1.3 276,002 + +0.1 276,002 + -0.2 276,002 + +1.5 276,002 + +0.7 276,002 + -0.0 276,002 + -0.9 276,002 + -0.3 276,002 + -0.4 276,002 + +0.1 276,003 - -3.0 276,016 + +2.3 276,016 + +0.3 276,103 + fixA OKGIIK_01260 0.12 +1.0 276,103 + fixA OKGIIK_01260 0.12 -3.7 276,724 + -1.3 276,724 + -1.3 276,724 + -1.3 276,724 + -1.6 276,725 - -1.8 276,725 - +0.6 276,725 - -3.3 276,725 - -1.1 276,725 - -1.3 276,725 - -2.3 276,725 - -2.6 276,742 + +1.0 276,743 - -1.3 276,815 + -0.0 276,815 + -0.5 276,815 + +1.4 276,816 - +3.2 276,816 - -0.9 276,816 - -0.3 276,816 - -0.9 276,816 - -0.0 276,835 + -1.3 276,835 + +1.6 276,835 + +0.3 276,835 + +0.8 276,836 - -1.6 276,836 - +1.7 276,836 - +1.4 276,898 + -2.0 276,899 - -0.8 276,899 - -1.6 276,899 - -1.3 276,904 + -1.8 277,083 + -0.2 277,083 + -1.0 277,083 + +1.0 277,083 + -2.5 277,083 + +0.4 277,084 - -2.3 277,132 + OKGIIK_01265 0.12 -1.3 277,132 + OKGIIK_01265 0.12 -2.6 277,133 - OKGIIK_01265 0.12 -1.0 277,133 - OKGIIK_01265 0.12 -2.5 277,133 - OKGIIK_01265 0.12 +0.9 277,133 - OKGIIK_01265 0.12 -0.6 277,174 + OKGIIK_01265 0.14 +1.2 277,174 + OKGIIK_01265 0.14 -2.6 277,175 - OKGIIK_01265 0.14 +1.6 277,175 - OKGIIK_01265 0.14 -1.0 277,175 - OKGIIK_01265 0.14 -0.0 277,175 - OKGIIK_01265 0.14 -0.6 277,204 + OKGIIK_01265 0.16 -1.7 277,204 + OKGIIK_01265 0.16 -3.0 277,204 + OKGIIK_01265 0.16 +1.0 277,204 + OKGIIK_01265 0.16 -1.6 277,204 + OKGIIK_01265 0.16 -1.6 277,204 + OKGIIK_01265 0.16 +1.0 277,204 + OKGIIK_01265 0.16 -0.0 277,204 + OKGIIK_01265 0.16 +0.4 277,204 + OKGIIK_01265 0.16 -2.2 277,204 + OKGIIK_01265 0.16 +0.4 277,204 + OKGIIK_01265 0.16 -0.6 277,204 + OKGIIK_01265 0.16 -2.2 277,205 - OKGIIK_01265 0.16 -0.6 277,205 - OKGIIK_01265 0.16 -1.1 277,205 - OKGIIK_01265 0.16 -1.1 277,205 - OKGIIK_01265 0.16 -0.0 277,205 - OKGIIK_01265 0.16 -1.3 277,205 - OKGIIK_01265 0.16 -0.8 277,205 - OKGIIK_01265 0.16 -0.6 277,205 - OKGIIK_01265 0.16 -1.3 277,205 - OKGIIK_01265 0.16 +0.3 277,205 - OKGIIK_01265 0.16 -2.5 277,305 + OKGIIK_01265 0.21 +1.0 277,305 + OKGIIK_01265 0.21 +1.0 277,305 + OKGIIK_01265 0.21 -1.5 277,305 + OKGIIK_01265 0.21 -0.7 277,305 + OKGIIK_01265 0.21 -1.3 277,305 + OKGIIK_01265 0.21 -1.7 277,306 - OKGIIK_01265 0.21 -0.6 277,306 - OKGIIK_01265 0.21 +0.6 277,306 - OKGIIK_01265 0.21 +1.0 277,306 - OKGIIK_01265 0.21 +1.0 277,306 - OKGIIK_01265 0.21 -0.6 277,482 + OKGIIK_01265 0.29 +0.7 277,482 + OKGIIK_01265 0.29 -1.8 277,483 - OKGIIK_01265 0.29 -1.0 277,697 + OKGIIK_01265 0.40 +0.2 277,697 + OKGIIK_01265 0.40 -0.4 277,697 + OKGIIK_01265 0.40 -1.0 277,697 + OKGIIK_01265 0.40 -0.2 277,697 + OKGIIK_01265 0.40 -1.3 277,697 + OKGIIK_01265 0.40 -0.0 277,697 + OKGIIK_01265 0.40 -0.5 277,698 - OKGIIK_01265 0.40 -4.3 277,698 - OKGIIK_01265 0.40 -1.6 277,698 - OKGIIK_01265 0.40 -0.0 277,698 - OKGIIK_01265 0.40 -0.6 277,698 - OKGIIK_01265 0.40 -0.3
Or see this region's nucleotide sequence