Experiment: NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01150 and cpsB are separated by 412 nucleotides cpsB and rfbD are separated by 16 nucleotides
OKGIIK_01150: OKGIIK_01150 - Protein adenylyltransferase, at 247,277 to 248,410
_01150
OKGIIK_01155: cpsB - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 248,823 to 250,235
cpsB
OKGIIK_01160: rfbD - dTDP-4-dehydrorhamnose reductase, at 250,252 to 251,187
rfbD
Position (kb) 248
249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 247.902 kb on - strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.938 kb on + strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.939 kb on - strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.956 kb on + strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 247.957 kb on - strand, within OKGIIK_01150 at 248.058 kb on + strand, within OKGIIK_01150 at 248.086 kb on - strand, within OKGIIK_01150 at 248.213 kb on + strand, within OKGIIK_01150 at 248.213 kb on + strand, within OKGIIK_01150 at 248.213 kb on + strand, within OKGIIK_01150 at 248.213 kb on + strand, within OKGIIK_01150 at 248.213 kb on + strand, within OKGIIK_01150 at 248.213 kb on + strand, within OKGIIK_01150 at 248.214 kb on - strand, within OKGIIK_01150 at 248.214 kb on - strand, within OKGIIK_01150 at 248.214 kb on - strand, within OKGIIK_01150 at 248.283 kb on + strand, within OKGIIK_01150 at 248.284 kb on - strand, within OKGIIK_01150 at 248.284 kb on - strand, within OKGIIK_01150 at 248.284 kb on - strand, within OKGIIK_01150 at 248.284 kb on - strand, within OKGIIK_01150 at 248.284 kb on - strand, within OKGIIK_01150 at 248.335 kb on - strand at 248.413 kb on + strand at 248.413 kb on + strand at 248.413 kb on + strand at 248.413 kb on + strand at 248.413 kb on + strand at 248.413 kb on + strand at 248.413 kb on + strand at 248.414 kb on - strand at 248.414 kb on - strand at 248.698 kb on - strand at 248.794 kb on + strand at 248.795 kb on - strand at 248.795 kb on - strand at 248.795 kb on - strand at 248.795 kb on - strand at 248.795 kb on - strand at 248.836 kb on + strand at 248.836 kb on + strand at 248.837 kb on - strand at 248.837 kb on - strand at 248.837 kb on - strand at 248.848 kb on + strand at 248.849 kb on - strand at 248.875 kb on + strand at 248.875 kb on + strand at 248.875 kb on + strand at 248.876 kb on - strand at 248.876 kb on - strand at 248.876 kb on - strand at 248.876 kb on - strand at 248.876 kb on - strand at 248.876 kb on - strand at 248.954 kb on + strand at 248.955 kb on - strand at 248.955 kb on - strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.956 kb on + strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 248.957 kb on - strand at 249.133 kb on + strand, within cpsB at 249.133 kb on + strand, within cpsB at 249.133 kb on + strand, within cpsB at 249.133 kb on + strand, within cpsB at 249.133 kb on + strand, within cpsB at 249.134 kb on - strand, within cpsB at 249.134 kb on - strand, within cpsB at 249.134 kb on - strand, within cpsB at 249.134 kb on - strand, within cpsB at 249.134 kb on - strand, within cpsB at 249.134 kb on - strand, within cpsB at 249.568 kb on + strand, within cpsB at 249.568 kb on + strand, within cpsB at 249.569 kb on - strand, within cpsB at 249.626 kb on - strand, within cpsB at 249.626 kb on - strand, within cpsB at 249.667 kb on + strand, within cpsB at 249.685 kb on + strand, within cpsB at 249.685 kb on + strand, within cpsB at 249.686 kb on - strand, within cpsB at 249.686 kb on - strand, within cpsB at 249.686 kb on - strand, within cpsB at 249.686 kb on - strand, within cpsB at 249.772 kb on + strand, within cpsB at 249.772 kb on + strand, within cpsB at 249.772 kb on + strand, within cpsB at 249.772 kb on + strand, within cpsB at 249.772 kb on + strand, within cpsB at 249.772 kb on + strand, within cpsB at 249.773 kb on - strand, within cpsB at 249.773 kb on - strand, within cpsB at 249.773 kb on - strand, within cpsB at 249.773 kb on - strand, within cpsB at 249.773 kb on - strand, within cpsB at 249.906 kb on + strand, within cpsB at 249.907 kb on - strand, within cpsB at 249.907 kb on - strand, within cpsB at 249.907 kb on - strand, within cpsB at 249.907 kb on - strand, within cpsB at 250.017 kb on - strand, within cpsB at 250.017 kb on - strand, within cpsB at 250.199 kb on + strand at 250.268 kb on - strand at 250.348 kb on - strand, within rfbD at 250.701 kb on - strand, within rfbD at 250.701 kb on - strand, within rfbD at 250.781 kb on + strand, within rfbD at 250.817 kb on + strand, within rfbD at 250.817 kb on + strand, within rfbD at 250.817 kb on + strand, within rfbD at 250.847 kb on + strand, within rfbD at 250.847 kb on + strand, within rfbD at 250.847 kb on + strand, within rfbD at 250.847 kb on + strand, within rfbD at 250.847 kb on + strand, within rfbD at 250.847 kb on + strand, within rfbD at 250.848 kb on - strand, within rfbD at 250.848 kb on - strand, within rfbD at 250.848 kb on - strand, within rfbD at 250.848 kb on - strand, within rfbD at 250.848 kb on - strand, within rfbD at 250.848 kb on - strand, within rfbD at 250.859 kb on + strand, within rfbD at 250.859 kb on + strand, within rfbD at 250.859 kb on + strand, within rfbD at 250.859 kb on + strand, within rfbD at 250.860 kb on - strand, within rfbD at 250.860 kb on - strand, within rfbD at 250.860 kb on - strand, within rfbD at 250.860 kb on - strand, within rfbD at 250.974 kb on - strand, within rfbD at 250.974 kb on - strand, within rfbD at 250.974 kb on - strand, within rfbD at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.176 kb on + strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.177 kb on - strand at 251.203 kb on + strand at 251.203 kb on + strand at 251.203 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM remove 247,902 - OKGIIK_01150 0.55 +1.0 247,938 + OKGIIK_01150 0.58 +0.6 247,938 + OKGIIK_01150 0.58 +0.5 247,938 + OKGIIK_01150 0.58 -0.6 247,938 + OKGIIK_01150 0.58 -1.6 247,938 + OKGIIK_01150 0.58 +0.2 247,938 + OKGIIK_01150 0.58 -1.2 247,938 + OKGIIK_01150 0.58 -0.1 247,938 + OKGIIK_01150 0.58 +1.4 247,938 + OKGIIK_01150 0.58 +1.5 247,938 + OKGIIK_01150 0.58 -1.5 247,938 + OKGIIK_01150 0.58 -0.6 247,938 + OKGIIK_01150 0.58 -0.2 247,938 + OKGIIK_01150 0.58 +2.0 247,938 + OKGIIK_01150 0.58 +0.4 247,939 - OKGIIK_01150 0.58 +1.0 247,939 - OKGIIK_01150 0.58 -0.4 247,939 - OKGIIK_01150 0.58 +0.4 247,939 - OKGIIK_01150 0.58 -1.8 247,939 - OKGIIK_01150 0.58 +0.0 247,939 - OKGIIK_01150 0.58 -0.6 247,939 - OKGIIK_01150 0.58 -1.3 247,939 - OKGIIK_01150 0.58 +2.0 247,939 - OKGIIK_01150 0.58 +1.0 247,939 - OKGIIK_01150 0.58 +0.2 247,939 - OKGIIK_01150 0.58 +0.2 247,939 - OKGIIK_01150 0.58 +0.3 247,939 - OKGIIK_01150 0.58 -0.8 247,939 - OKGIIK_01150 0.58 -1.0 247,939 - OKGIIK_01150 0.58 +1.0 247,939 - OKGIIK_01150 0.58 +0.0 247,939 - OKGIIK_01150 0.58 +0.4 247,939 - OKGIIK_01150 0.58 +1.0 247,939 - OKGIIK_01150 0.58 -0.6 247,939 - OKGIIK_01150 0.58 +0.6 247,939 - OKGIIK_01150 0.58 +1.0 247,939 - OKGIIK_01150 0.58 +0.0 247,956 + OKGIIK_01150 0.60 -0.2 247,956 + OKGIIK_01150 0.60 +0.6 247,956 + OKGIIK_01150 0.60 -1.3 247,956 + OKGIIK_01150 0.60 +0.1 247,956 + OKGIIK_01150 0.60 -1.3 247,956 + OKGIIK_01150 0.60 +0.3 247,956 + OKGIIK_01150 0.60 -0.3 247,956 + OKGIIK_01150 0.60 +2.3 247,956 + OKGIIK_01150 0.60 +1.7 247,957 - OKGIIK_01150 0.60 +0.0 247,957 - OKGIIK_01150 0.60 +0.0 247,957 - OKGIIK_01150 0.60 -1.5 247,957 - OKGIIK_01150 0.60 +2.0 247,957 - OKGIIK_01150 0.60 -0.8 247,957 - OKGIIK_01150 0.60 +1.7 247,957 - OKGIIK_01150 0.60 +1.0 247,957 - OKGIIK_01150 0.60 +0.2 247,957 - OKGIIK_01150 0.60 -0.2 247,957 - OKGIIK_01150 0.60 +0.0 247,957 - OKGIIK_01150 0.60 +1.2 247,957 - OKGIIK_01150 0.60 +1.0 247,957 - OKGIIK_01150 0.60 +0.3 247,957 - OKGIIK_01150 0.60 +2.1 247,957 - OKGIIK_01150 0.60 +0.0 247,957 - OKGIIK_01150 0.60 +2.4 247,957 - OKGIIK_01150 0.60 +1.0 248,058 + OKGIIK_01150 0.69 -0.2 248,086 - OKGIIK_01150 0.71 +0.0 248,213 + OKGIIK_01150 0.83 -1.2 248,213 + OKGIIK_01150 0.83 -0.8 248,213 + OKGIIK_01150 0.83 -1.3 248,213 + OKGIIK_01150 0.83 -0.3 248,213 + OKGIIK_01150 0.83 +0.0 248,213 + OKGIIK_01150 0.83 -0.3 248,214 - OKGIIK_01150 0.83 +1.0 248,214 - OKGIIK_01150 0.83 +0.0 248,214 - OKGIIK_01150 0.83 +0.8 248,283 + OKGIIK_01150 0.89 -1.0 248,284 - OKGIIK_01150 0.89 -2.3 248,284 - OKGIIK_01150 0.89 +0.2 248,284 - OKGIIK_01150 0.89 -2.7 248,284 - OKGIIK_01150 0.89 +0.6 248,284 - OKGIIK_01150 0.89 -1.0 248,335 - +2.6 248,413 + -1.3 248,413 + -1.0 248,413 + +1.3 248,413 + -1.8 248,413 + +2.2 248,413 + -0.6 248,413 + +1.0 248,414 - -1.6 248,414 - -1.5 248,698 - +1.2 248,794 + -1.0 248,795 - +0.3 248,795 - -0.8 248,795 - -0.6 248,795 - +1.4 248,795 - -2.3 248,836 + -1.3 248,836 + -0.2 248,837 - +1.0 248,837 - -0.6 248,837 - +2.6 248,848 + +0.0 248,849 - -0.6 248,875 + -2.0 248,875 + -1.0 248,875 + -0.6 248,876 - +0.0 248,876 - +0.0 248,876 - -2.5 248,876 - -1.8 248,876 - -2.2 248,876 - -0.6 248,954 + +0.0 248,955 - +0.0 248,955 - -1.8 248,956 + -2.0 248,956 + -1.6 248,956 + +1.0 248,956 + -1.3 248,956 + -1.8 248,956 + -1.2 248,956 + -2.0 248,956 + -0.3 248,956 + -1.8 248,956 + -1.3 248,956 + -0.6 248,956 + -2.2 248,956 + -2.7 248,956 + +1.0 248,956 + -1.6 248,956 + -2.0 248,956 + -1.0 248,956 + +1.0 248,956 + -2.3 248,956 + -1.0 248,956 + -2.0 248,956 + +0.0 248,956 + -1.3 248,956 + +0.0 248,956 + -1.0 248,956 + -3.1 248,956 + -1.8 248,956 + -0.6 248,956 + -1.6 248,956 + -0.6 248,957 - -2.0 248,957 - +1.0 248,957 - +1.0 248,957 - +0.0 248,957 - -1.0 248,957 - -0.6 248,957 - +1.0 248,957 - -1.0 248,957 - -2.2 248,957 - -2.2 248,957 - -1.3 248,957 - -1.0 248,957 - -1.0 248,957 - -0.6 248,957 - +0.0 248,957 - +1.0 248,957 - -1.0 248,957 - -0.6 248,957 - +1.0 248,957 - +1.0 248,957 - -1.3 248,957 - +0.0 248,957 - -1.0 248,957 - +0.0 248,957 - -2.2 249,133 + cpsB OKGIIK_01155 0.22 +1.0 249,133 + cpsB OKGIIK_01155 0.22 +1.0 249,133 + cpsB OKGIIK_01155 0.22 +0.0 249,133 + cpsB OKGIIK_01155 0.22 +0.0 249,133 + cpsB OKGIIK_01155 0.22 -1.3 249,134 - cpsB OKGIIK_01155 0.22 +0.0 249,134 - cpsB OKGIIK_01155 0.22 -1.3 249,134 - cpsB OKGIIK_01155 0.22 -0.2 249,134 - cpsB OKGIIK_01155 0.22 -1.8 249,134 - cpsB OKGIIK_01155 0.22 -1.0 249,134 - cpsB OKGIIK_01155 0.22 -1.6 249,568 + cpsB OKGIIK_01155 0.53 +0.0 249,568 + cpsB OKGIIK_01155 0.53 +1.0 249,569 - cpsB OKGIIK_01155 0.53 +0.0 249,626 - cpsB OKGIIK_01155 0.57 -0.3 249,626 - cpsB OKGIIK_01155 0.57 -1.6 249,667 + cpsB OKGIIK_01155 0.60 -0.6 249,685 + cpsB OKGIIK_01155 0.61 +0.0 249,685 + cpsB OKGIIK_01155 0.61 -1.3 249,686 - cpsB OKGIIK_01155 0.61 -1.3 249,686 - cpsB OKGIIK_01155 0.61 -0.6 249,686 - cpsB OKGIIK_01155 0.61 +1.0 249,686 - cpsB OKGIIK_01155 0.61 +1.0 249,772 + cpsB OKGIIK_01155 0.67 +0.0 249,772 + cpsB OKGIIK_01155 0.67 +0.0 249,772 + cpsB OKGIIK_01155 0.67 -0.6 249,772 + cpsB OKGIIK_01155 0.67 -0.6 249,772 + cpsB OKGIIK_01155 0.67 +1.0 249,772 + cpsB OKGIIK_01155 0.67 -2.0 249,773 - cpsB OKGIIK_01155 0.67 -1.6 249,773 - cpsB OKGIIK_01155 0.67 -1.0 249,773 - cpsB OKGIIK_01155 0.67 -2.2 249,773 - cpsB OKGIIK_01155 0.67 -0.6 249,773 - cpsB OKGIIK_01155 0.67 +0.0 249,906 + cpsB OKGIIK_01155 0.77 -0.6 249,907 - cpsB OKGIIK_01155 0.77 -1.6 249,907 - cpsB OKGIIK_01155 0.77 -1.6 249,907 - cpsB OKGIIK_01155 0.77 -1.3 249,907 - cpsB OKGIIK_01155 0.77 -0.6 250,017 - cpsB OKGIIK_01155 0.85 -0.6 250,017 - cpsB OKGIIK_01155 0.85 -1.0 250,199 + +0.0 250,268 - +1.7 250,348 - rfbD OKGIIK_01160 0.10 -2.2 250,701 - rfbD OKGIIK_01160 0.48 -1.6 250,701 - rfbD OKGIIK_01160 0.48 -1.6 250,781 + rfbD OKGIIK_01160 0.57 +0.4 250,817 + rfbD OKGIIK_01160 0.60 -1.8 250,817 + rfbD OKGIIK_01160 0.60 -2.5 250,817 + rfbD OKGIIK_01160 0.60 +0.3 250,847 + rfbD OKGIIK_01160 0.64 -0.6 250,847 + rfbD OKGIIK_01160 0.64 -1.6 250,847 + rfbD OKGIIK_01160 0.64 -2.0 250,847 + rfbD OKGIIK_01160 0.64 +0.0 250,847 + rfbD OKGIIK_01160 0.64 +0.0 250,847 + rfbD OKGIIK_01160 0.64 +0.6 250,848 - rfbD OKGIIK_01160 0.64 -0.6 250,848 - rfbD OKGIIK_01160 0.64 +1.0 250,848 - rfbD OKGIIK_01160 0.64 -1.3 250,848 - rfbD OKGIIK_01160 0.64 -1.0 250,848 - rfbD OKGIIK_01160 0.64 -1.0 250,848 - rfbD OKGIIK_01160 0.64 -1.8 250,859 + rfbD OKGIIK_01160 0.65 -0.6 250,859 + rfbD OKGIIK_01160 0.65 -1.0 250,859 + rfbD OKGIIK_01160 0.65 -1.8 250,859 + rfbD OKGIIK_01160 0.65 +0.4 250,860 - rfbD OKGIIK_01160 0.65 -1.3 250,860 - rfbD OKGIIK_01160 0.65 -1.6 250,860 - rfbD OKGIIK_01160 0.65 -1.8 250,860 - rfbD OKGIIK_01160 0.65 +1.0 250,974 - rfbD OKGIIK_01160 0.77 -1.3 250,974 - rfbD OKGIIK_01160 0.77 +3.3 250,974 - rfbD OKGIIK_01160 0.77 +0.0 251,176 + +1.3 251,176 + -0.4 251,176 + -2.3 251,176 + +1.6 251,176 + -0.6 251,176 + +0.0 251,176 + +0.2 251,177 - -1.3 251,177 - +0.0 251,177 - -1.6 251,177 - -1.6 251,177 - -0.6 251,177 - -0.3 251,177 - +0.2 251,177 - +0.2 251,177 - -1.6 251,177 - -0.2 251,177 - -1.6 251,203 + -1.0 251,203 + +0.1 251,203 + +0.2
Or see this region's nucleotide sequence