Strain Fitness in Serratia liquefaciens MT49 around IAI46_04625

Experiment: Survival; Treatment=FW300; TreatmentDuration=1week; Outgrowth=LB_Kan30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04620 and IAI46_04625 are separated by 307 nucleotidesIAI46_04625 and IAI46_04630 are separated by 239 nucleotidesIAI46_04630 and IAI46_04635 overlap by 4 nucleotides IAI46_04620: IAI46_04620 - low temperature requirement protein A, at 991,514 to 992,689 _04620 IAI46_04625: IAI46_04625 - DUF1471 domain-containing protein, at 992,997 to 993,281 _04625 IAI46_04630: IAI46_04630 - methyltransferase, at 993,521 to 994,078 _04630 IAI46_04635: IAI46_04635 - GNAT family N-acetyltransferase, at 994,075 to 994,539 _04635 Position (kb) 992 993 994Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 992.057 kb on + strand, within IAI46_04620at 992.069 kb on + strand, within IAI46_04620at 992.069 kb on + strand, within IAI46_04620at 992.105 kb on - strand, within IAI46_04620at 992.184 kb on - strand, within IAI46_04620at 992.213 kb on - strand, within IAI46_04620at 992.257 kb on + strand, within IAI46_04620at 992.258 kb on - strand, within IAI46_04620at 992.258 kb on - strand, within IAI46_04620at 992.276 kb on - strand, within IAI46_04620at 992.453 kb on - strand, within IAI46_04620at 992.502 kb on + strand, within IAI46_04620at 992.502 kb on + strand, within IAI46_04620at 992.531 kb on + strand, within IAI46_04620at 992.531 kb on + strand, within IAI46_04620at 992.531 kb on + strand, within IAI46_04620at 992.532 kb on - strand, within IAI46_04620at 992.532 kb on - strand, within IAI46_04620at 992.689 kb on + strandat 992.689 kb on + strandat 992.689 kb on + strandat 992.711 kb on - strandat 992.729 kb on - strandat 992.729 kb on - strandat 992.729 kb on - strandat 992.821 kb on + strandat 992.833 kb on - strandat 992.835 kb on - strandat 992.861 kb on + strandat 992.871 kb on + strandat 992.911 kb on - strandat 992.911 kb on - strandat 992.920 kb on + strandat 992.946 kb on + strandat 992.947 kb on - strandat 992.947 kb on - strandat 992.950 kb on + strandat 992.972 kb on + strandat 992.997 kb on - strandat 993.089 kb on + strand, within IAI46_04625at 993.124 kb on + strand, within IAI46_04625at 993.124 kb on + strand, within IAI46_04625at 993.124 kb on + strand, within IAI46_04625at 993.216 kb on - strand, within IAI46_04625at 993.218 kb on + strand, within IAI46_04625at 993.271 kb on + strandat 993.271 kb on + strandat 993.271 kb on + strandat 993.272 kb on - strandat 993.272 kb on - strandat 993.272 kb on - strandat 993.293 kb on - strandat 993.296 kb on + strandat 993.312 kb on + strandat 993.312 kb on + strandat 993.313 kb on - strandat 993.377 kb on + strandat 993.428 kb on - strandat 993.431 kb on - strandat 993.462 kb on + strandat 993.469 kb on + strandat 993.474 kb on - strandat 993.499 kb on + strandat 993.500 kb on - strandat 993.500 kb on - strandat 993.508 kb on + strandat 993.509 kb on - strandat 993.509 kb on - strandat 993.509 kb on - strandat 993.526 kb on - strandat 993.627 kb on + strand, within IAI46_04630at 993.627 kb on + strand, within IAI46_04630at 993.628 kb on - strand, within IAI46_04630at 993.628 kb on - strand, within IAI46_04630at 993.717 kb on + strand, within IAI46_04630at 993.720 kb on + strand, within IAI46_04630at 993.910 kb on + strand, within IAI46_04630at 993.971 kb on + strand, within IAI46_04630at 993.972 kb on - strand, within IAI46_04630at 994.004 kb on + strand, within IAI46_04630at 994.058 kb on + strandat 994.115 kb on + strandat 994.116 kb on - strandat 994.158 kb on - strand, within IAI46_04635at 994.158 kb on - strand, within IAI46_04635at 994.158 kb on - strand, within IAI46_04635at 994.173 kb on + strand, within IAI46_04635at 994.193 kb on - strand, within IAI46_04635

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=1week; Outgrowth=LB_Kan30
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992,057 + IAI46_04620 0.46 -0.3
992,069 + IAI46_04620 0.47 -0.1
992,069 + IAI46_04620 0.47 +0.8
992,105 - IAI46_04620 0.50 +0.6
992,184 - IAI46_04620 0.57 +0.7
992,213 - IAI46_04620 0.59 +0.7
992,257 + IAI46_04620 0.63 -1.7
992,258 - IAI46_04620 0.63 +0.1
992,258 - IAI46_04620 0.63 +2.5
992,276 - IAI46_04620 0.65 +0.2
992,453 - IAI46_04620 0.80 -0.3
992,502 + IAI46_04620 0.84 -1.4
992,502 + IAI46_04620 0.84 +1.0
992,531 + IAI46_04620 0.86 +0.2
992,531 + IAI46_04620 0.86 -0.9
992,531 + IAI46_04620 0.86 +0.9
992,532 - IAI46_04620 0.87 +0.8
992,532 - IAI46_04620 0.87 -2.8
992,689 + -0.4
992,689 + -0.6
992,689 + -1.5
992,711 - -0.0
992,729 - -0.3
992,729 - -0.4
992,729 - -0.5
992,821 + +0.6
992,833 - -0.6
992,835 - +2.5
992,861 + +0.5
992,871 + -0.8
992,911 - -1.9
992,911 - +0.1
992,920 + +1.0
992,946 + +0.2
992,947 - +0.4
992,947 - +0.6
992,950 + -0.2
992,972 + +0.2
992,997 - +2.6
993,089 + IAI46_04625 0.32 -0.8
993,124 + IAI46_04625 0.45 -0.0
993,124 + IAI46_04625 0.45 -1.6
993,124 + IAI46_04625 0.45 -1.4
993,216 - IAI46_04625 0.77 +0.4
993,218 + IAI46_04625 0.78 +0.5
993,271 + -1.1
993,271 + +0.9
993,271 + +1.3
993,272 - -0.4
993,272 - +0.8
993,272 - -0.4
993,293 - -1.2
993,296 + +0.2
993,312 + +0.3
993,312 + +0.5
993,313 - +0.3
993,377 + -0.7
993,428 - +0.6
993,431 - +0.7
993,462 + +0.7
993,469 + +0.2
993,474 - +1.1
993,499 + +0.8
993,500 - +1.4
993,500 - -0.8
993,508 + +1.1
993,509 - -0.2
993,509 - +0.7
993,509 - +0.1
993,526 - +0.1
993,627 + IAI46_04630 0.19 -1.0
993,627 + IAI46_04630 0.19 -0.1
993,628 - IAI46_04630 0.19 +3.0
993,628 - IAI46_04630 0.19 +0.4
993,717 + IAI46_04630 0.35 +1.1
993,720 + IAI46_04630 0.36 +0.7
993,910 + IAI46_04630 0.70 -0.2
993,971 + IAI46_04630 0.81 +1.9
993,972 - IAI46_04630 0.81 +1.1
994,004 + IAI46_04630 0.87 +0.6
994,058 + -2.1
994,115 + +0.5
994,116 - -0.1
994,158 - IAI46_04635 0.18 +1.4
994,158 - IAI46_04635 0.18 -1.0
994,158 - IAI46_04635 0.18 -0.1
994,173 + IAI46_04635 0.21 -0.3
994,193 - IAI46_04635 0.25 -0.2

Or see this region's nucleotide sequence