Experiment: WM_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegQ and ogrK are separated by 273 nucleotides ogrK and MCAODC_20790 are separated by 81 nucleotides
MCAODC_20775: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 968,992 to 970,353
yegQ
MCAODC_20785: ogrK - prophage transcriptional regulator OgrK, at 970,627 to 970,845
ogrK
MCAODC_20790: MCAODC_20790 - putative baseplate hub protein, at 970,927 to 972,090
_20790
Position (kb) 970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 969.635 kb on + strand, within yegQ at 969.711 kb on + strand, within yegQ at 969.742 kb on + strand, within yegQ at 969.742 kb on + strand, within yegQ at 969.742 kb on + strand, within yegQ at 969.742 kb on + strand, within yegQ at 969.743 kb on - strand, within yegQ at 969.744 kb on + strand, within yegQ at 969.745 kb on - strand, within yegQ at 969.745 kb on - strand, within yegQ at 969.745 kb on - strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.815 kb on + strand, within yegQ at 969.816 kb on - strand, within yegQ at 969.816 kb on - strand, within yegQ at 969.867 kb on + strand, within yegQ at 969.867 kb on + strand, within yegQ at 969.878 kb on - strand, within yegQ at 969.880 kb on + strand, within yegQ at 969.880 kb on + strand, within yegQ at 969.881 kb on - strand, within yegQ at 969.991 kb on + strand, within yegQ at 969.991 kb on + strand, within yegQ at 969.992 kb on - strand, within yegQ at 969.993 kb on + strand, within yegQ at 970.030 kb on + strand, within yegQ at 970.039 kb on + strand, within yegQ at 970.040 kb on - strand, within yegQ at 970.040 kb on - strand, within yegQ at 970.045 kb on + strand, within yegQ at 970.227 kb on + strand at 970.252 kb on + strand at 970.252 kb on + strand at 970.254 kb on + strand at 970.254 kb on + strand at 970.254 kb on + strand at 970.255 kb on - strand at 970.255 kb on - strand at 970.311 kb on + strand at 970.312 kb on - strand at 970.329 kb on + strand at 970.347 kb on + strand at 970.355 kb on + strand at 970.404 kb on + strand at 970.464 kb on + strand at 970.464 kb on + strand at 970.573 kb on + strand at 970.574 kb on - strand at 970.574 kb on - strand at 970.625 kb on - strand at 970.629 kb on - strand at 970.629 kb on - strand at 970.629 kb on - strand at 970.629 kb on - strand at 970.639 kb on - strand at 970.704 kb on - strand, within ogrK at 970.704 kb on - strand, within ogrK at 970.722 kb on - strand, within ogrK at 970.767 kb on - strand, within ogrK at 970.791 kb on + strand, within ogrK at 970.792 kb on - strand, within ogrK at 970.982 kb on - strand at 971.025 kb on + strand at 971.025 kb on + strand at 971.026 kb on - strand at 971.026 kb on - strand at 971.051 kb on - strand, within MCAODC_20790 at 971.093 kb on + strand, within MCAODC_20790 at 971.094 kb on - strand, within MCAODC_20790 at 971.097 kb on + strand, within MCAODC_20790 at 971.098 kb on - strand, within MCAODC_20790 at 971.098 kb on - strand, within MCAODC_20790 at 971.098 kb on - strand, within MCAODC_20790 at 971.098 kb on - strand, within MCAODC_20790 at 971.201 kb on + strand, within MCAODC_20790 at 971.204 kb on - strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790 at 971.359 kb on + strand, within MCAODC_20790 at 971.360 kb on - strand, within MCAODC_20790 at 971.360 kb on - strand, within MCAODC_20790 at 971.396 kb on - strand, within MCAODC_20790 at 971.420 kb on + strand, within MCAODC_20790 at 971.680 kb on - strand, within MCAODC_20790 at 971.690 kb on - strand, within MCAODC_20790
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas36 remove 969,635 + yegQ MCAODC_20775 0.47 +0.1 969,711 + yegQ MCAODC_20775 0.53 -1.0 969,742 + yegQ MCAODC_20775 0.55 -1.1 969,742 + yegQ MCAODC_20775 0.55 +1.9 969,742 + yegQ MCAODC_20775 0.55 +1.5 969,742 + yegQ MCAODC_20775 0.55 -1.4 969,743 - yegQ MCAODC_20775 0.55 +2.3 969,744 + yegQ MCAODC_20775 0.55 -0.2 969,745 - yegQ MCAODC_20775 0.55 +0.6 969,745 - yegQ MCAODC_20775 0.55 +2.6 969,745 - yegQ MCAODC_20775 0.55 +0.3 969,775 + yegQ MCAODC_20775 0.57 +0.4 969,775 + yegQ MCAODC_20775 0.57 -2.0 969,775 + yegQ MCAODC_20775 0.57 +0.4 969,775 + yegQ MCAODC_20775 0.57 -0.7 969,775 + yegQ MCAODC_20775 0.57 -0.5 969,775 + yegQ MCAODC_20775 0.57 +0.3 969,776 - yegQ MCAODC_20775 0.58 +1.2 969,776 - yegQ MCAODC_20775 0.58 -0.8 969,776 - yegQ MCAODC_20775 0.58 +1.9 969,776 - yegQ MCAODC_20775 0.58 -0.5 969,776 - yegQ MCAODC_20775 0.58 -1.4 969,776 - yegQ MCAODC_20775 0.58 -0.1 969,815 + yegQ MCAODC_20775 0.60 -0.2 969,816 - yegQ MCAODC_20775 0.60 -0.1 969,816 - yegQ MCAODC_20775 0.60 +1.2 969,867 + yegQ MCAODC_20775 0.64 +1.8 969,867 + yegQ MCAODC_20775 0.64 +0.4 969,878 - yegQ MCAODC_20775 0.65 -0.4 969,880 + yegQ MCAODC_20775 0.65 -1.9 969,880 + yegQ MCAODC_20775 0.65 +0.9 969,881 - yegQ MCAODC_20775 0.65 +0.4 969,991 + yegQ MCAODC_20775 0.73 -1.1 969,991 + yegQ MCAODC_20775 0.73 +2.0 969,992 - yegQ MCAODC_20775 0.73 -0.6 969,993 + yegQ MCAODC_20775 0.73 +0.6 970,030 + yegQ MCAODC_20775 0.76 -0.1 970,039 + yegQ MCAODC_20775 0.77 +1.5 970,040 - yegQ MCAODC_20775 0.77 +0.1 970,040 - yegQ MCAODC_20775 0.77 +0.1 970,045 + yegQ MCAODC_20775 0.77 -2.1 970,227 + -1.1 970,252 + +0.4 970,252 + -1.1 970,254 + -2.6 970,254 + -1.4 970,254 + +0.2 970,255 - +2.4 970,255 - -0.0 970,311 + -1.0 970,312 - -1.5 970,329 + +0.4 970,347 + -0.2 970,355 + +0.2 970,404 + -0.0 970,464 + -0.1 970,464 + +0.8 970,573 + +0.0 970,574 - +3.2 970,574 - -0.7 970,625 - -0.6 970,629 - -0.4 970,629 - +1.3 970,629 - -0.4 970,629 - +0.1 970,639 - +0.3 970,704 - ogrK MCAODC_20785 0.35 +0.2 970,704 - ogrK MCAODC_20785 0.35 -0.4 970,722 - ogrK MCAODC_20785 0.43 -1.0 970,767 - ogrK MCAODC_20785 0.64 -0.8 970,791 + ogrK MCAODC_20785 0.75 -1.3 970,792 - ogrK MCAODC_20785 0.75 -2.3 970,982 - +0.4 971,025 + -0.1 971,025 + -1.8 971,026 - -0.0 971,026 - +0.9 971,051 - MCAODC_20790 0.11 -0.8 971,093 + MCAODC_20790 0.14 +1.9 971,094 - MCAODC_20790 0.14 +0.9 971,097 + MCAODC_20790 0.15 +1.6 971,098 - MCAODC_20790 0.15 -1.0 971,098 - MCAODC_20790 0.15 +0.7 971,098 - MCAODC_20790 0.15 -0.1 971,098 - MCAODC_20790 0.15 -1.4 971,201 + MCAODC_20790 0.24 +1.0 971,204 - MCAODC_20790 0.24 +1.2 971,246 + MCAODC_20790 0.27 -0.3 971,246 + MCAODC_20790 0.27 +0.7 971,246 + MCAODC_20790 0.27 -0.4 971,246 + MCAODC_20790 0.27 -1.1 971,246 + MCAODC_20790 0.27 -0.0 971,247 - MCAODC_20790 0.27 +0.3 971,247 - MCAODC_20790 0.27 -0.2 971,247 - MCAODC_20790 0.27 +0.6 971,247 - MCAODC_20790 0.27 +0.2 971,359 + MCAODC_20790 0.37 -0.7 971,360 - MCAODC_20790 0.37 +1.1 971,360 - MCAODC_20790 0.37 +0.4 971,396 - MCAODC_20790 0.40 -1.6 971,420 + MCAODC_20790 0.42 +0.0 971,680 - MCAODC_20790 0.65 +0.5 971,690 - MCAODC_20790 0.66 +0.3
Or see this region's nucleotide sequence