Experiment: WM_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebT and rsmF are separated by 73 nucleotides rsmF and yebV are separated by 117 nucleotides yebV and yebW are separated by 20 nucleotides yebW and pphA are separated by 0 nucleotides
MCAODC_18960: yebT - lipid-binding membrane homeostasis protein YebT, at 648,608 to 651,241
yebT
MCAODC_18965: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 651,315 to 652,760
rsmF
MCAODC_18970: yebV - Uncharacterized protein YebV, at 652,878 to 653,114
yebV
MCAODC_18975: yebW - Uncharacterized protein YebW, at 653,135 to 653,410
yebW
MCAODC_18980: pphA - protein-serine/threonine phosphatase, at 653,411 to 654,067
pphA
Position (kb) 651
652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 650.470 kb on + strand, within yebT at 650.518 kb on + strand, within yebT at 650.744 kb on - strand, within yebT at 650.746 kb on + strand, within yebT at 650.759 kb on + strand, within yebT at 650.762 kb on - strand, within yebT at 650.850 kb on + strand, within yebT at 650.857 kb on + strand, within yebT at 650.886 kb on + strand, within yebT at 650.999 kb on + strand at 650.999 kb on + strand at 651.278 kb on - strand at 651.793 kb on + strand, within rsmF at 651.825 kb on - strand, within rsmF at 652.285 kb on - strand, within rsmF at 652.751 kb on + strand at 652.860 kb on + strand at 652.927 kb on + strand, within yebV at 652.991 kb on + strand, within yebV at 653.062 kb on - strand, within yebV at 653.232 kb on + strand, within yebW at 653.232 kb on + strand, within yebW at 653.247 kb on - strand, within yebW at 653.269 kb on + strand, within yebW at 653.314 kb on + strand, within yebW at 653.367 kb on + strand, within yebW at 653.466 kb on + strand at 653.467 kb on - strand at 653.507 kb on - strand, within pphA at 653.537 kb on - strand, within pphA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas36 remove 650,470 + yebT MCAODC_18960 0.71 -0.1 650,518 + yebT MCAODC_18960 0.73 +0.2 650,744 - yebT MCAODC_18960 0.81 -0.4 650,746 + yebT MCAODC_18960 0.81 +1.8 650,759 + yebT MCAODC_18960 0.82 +1.5 650,762 - yebT MCAODC_18960 0.82 -0.7 650,850 + yebT MCAODC_18960 0.85 -0.9 650,857 + yebT MCAODC_18960 0.85 +2.0 650,886 + yebT MCAODC_18960 0.86 -0.1 650,999 + -3.5 650,999 + +1.5 651,278 - +0.4 651,793 + rsmF MCAODC_18965 0.33 -2.0 651,825 - rsmF MCAODC_18965 0.35 -2.8 652,285 - rsmF MCAODC_18965 0.67 -0.7 652,751 + +0.4 652,860 + +2.5 652,927 + yebV MCAODC_18970 0.21 +0.2 652,991 + yebV MCAODC_18970 0.48 +1.8 653,062 - yebV MCAODC_18970 0.78 +0.5 653,232 + yebW MCAODC_18975 0.35 -0.2 653,232 + yebW MCAODC_18975 0.35 +0.3 653,247 - yebW MCAODC_18975 0.41 -1.6 653,269 + yebW MCAODC_18975 0.49 +0.4 653,314 + yebW MCAODC_18975 0.65 +0.8 653,367 + yebW MCAODC_18975 0.84 +0.6 653,466 + +1.2 653,467 - -0.0 653,507 - pphA MCAODC_18980 0.15 +2.8 653,537 - pphA MCAODC_18980 0.19 -0.1
Or see this region's nucleotide sequence