Strain Fitness in Escherichia coli ECRC101 around MCAODC_17760

Experiment: WM_Bas36

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttus and fumC overlap by 4 nucleotidesfumC and fumB are separated by 142 nucleotides MCAODC_17755: tus - DNA replication terminus site-binding protein, at 413,329 to 414,258 tus MCAODC_17760: fumC - class II fumarate hydratase, at 414,255 to 415,658 fumC MCAODC_17765: fumB - class I fumarate hydratase, at 415,801 to 417,447 fumB Position (kb) 414 415 416Strain fitness (log2 ratio) -2 -1 0 1 2at 413.294 kb on - strandat 413.322 kb on + strandat 413.325 kb on + strandat 413.325 kb on + strandat 413.364 kb on + strandat 413.427 kb on - strand, within tusat 413.562 kb on + strand, within tusat 413.667 kb on + strand, within tusat 413.667 kb on + strand, within tusat 413.787 kb on + strand, within tusat 413.787 kb on + strand, within tusat 413.787 kb on + strand, within tusat 413.794 kb on + strand, within tusat 413.831 kb on + strand, within tusat 413.847 kb on + strand, within tusat 413.856 kb on + strand, within tusat 413.857 kb on - strand, within tusat 414.126 kb on + strand, within tusat 414.193 kb on + strandat 414.195 kb on + strandat 414.195 kb on + strandat 414.244 kb on + strandat 414.245 kb on - strandat 414.354 kb on + strandat 414.355 kb on - strandat 414.456 kb on + strand, within fumCat 414.899 kb on + strand, within fumCat 414.899 kb on + strand, within fumCat 414.947 kb on + strand, within fumCat 415.383 kb on - strand, within fumCat 415.652 kb on + strandat 415.653 kb on - strandat 415.663 kb on + strandat 415.772 kb on - strandat 416.007 kb on - strand, within fumBat 416.076 kb on + strand, within fumBat 416.077 kb on - strand, within fumBat 416.077 kb on - strand, within fumBat 416.077 kb on - strand, within fumBat 416.077 kb on - strand, within fumBat 416.108 kb on + strand, within fumBat 416.109 kb on - strand, within fumBat 416.109 kb on - strand, within fumBat 416.157 kb on - strand, within fumBat 416.428 kb on - strand, within fumBat 416.575 kb on - strand, within fumB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas36
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413,294 - +1.3
413,322 + +0.7
413,325 + -0.0
413,325 + +1.4
413,364 + +1.7
413,427 - tus MCAODC_17755 0.11 +0.4
413,562 + tus MCAODC_17755 0.25 +0.3
413,667 + tus MCAODC_17755 0.36 +0.3
413,667 + tus MCAODC_17755 0.36 +0.7
413,787 + tus MCAODC_17755 0.49 +2.7
413,787 + tus MCAODC_17755 0.49 +0.2
413,787 + tus MCAODC_17755 0.49 -0.7
413,794 + tus MCAODC_17755 0.50 -0.5
413,831 + tus MCAODC_17755 0.54 +2.3
413,847 + tus MCAODC_17755 0.56 -2.2
413,856 + tus MCAODC_17755 0.57 -0.0
413,857 - tus MCAODC_17755 0.57 +0.5
414,126 + tus MCAODC_17755 0.86 +0.3
414,193 + +0.5
414,195 + -0.2
414,195 + +0.2
414,244 + -0.2
414,245 - +0.3
414,354 + -0.9
414,355 - +0.0
414,456 + fumC MCAODC_17760 0.14 -1.1
414,899 + fumC MCAODC_17760 0.46 -1.5
414,899 + fumC MCAODC_17760 0.46 -1.5
414,947 + fumC MCAODC_17760 0.49 +0.2
415,383 - fumC MCAODC_17760 0.80 -1.2
415,652 + -0.4
415,653 - +1.3
415,663 + +0.2
415,772 - +0.3
416,007 - fumB MCAODC_17765 0.13 -0.5
416,076 + fumB MCAODC_17765 0.17 +0.8
416,077 - fumB MCAODC_17765 0.17 +0.4
416,077 - fumB MCAODC_17765 0.17 -0.1
416,077 - fumB MCAODC_17765 0.17 +0.1
416,077 - fumB MCAODC_17765 0.17 +0.5
416,108 + fumB MCAODC_17765 0.19 -0.9
416,109 - fumB MCAODC_17765 0.19 +0.0
416,109 - fumB MCAODC_17765 0.19 -0.7
416,157 - fumB MCAODC_17765 0.22 -0.1
416,428 - fumB MCAODC_17765 0.38 -1.1
416,575 - fumB MCAODC_17765 0.47 +0.3

Or see this region's nucleotide sequence