Strain Fitness in Escherichia coli ECRC101 around MCAODC_16435

Experiment: WM_Bas36

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntansP and yncG are separated by 266 nucleotidesyncG and MCAODC_16440 are separated by 75 nucleotides MCAODC_16430: ansP - L-asparagine permease, at 177,810 to 179,309 ansP MCAODC_16435: yncG - Uncharacterized GST-like protein YncG, at 179,576 to 180,193 yncG MCAODC_16440: MCAODC_16440 - Uncharacterized protein YncH, at 180,269 to 180,481 _16440 Position (kb) 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 178.590 kb on - strand, within ansPat 178.690 kb on - strand, within ansPat 178.690 kb on - strand, within ansPat 178.782 kb on - strand, within ansPat 178.833 kb on - strand, within ansPat 178.833 kb on - strand, within ansPat 178.853 kb on + strand, within ansPat 178.913 kb on + strand, within ansPat 178.914 kb on - strand, within ansPat 178.914 kb on - strand, within ansPat 178.915 kb on + strand, within ansPat 178.916 kb on - strand, within ansPat 178.916 kb on - strand, within ansPat 178.916 kb on - strand, within ansPat 178.916 kb on - strand, within ansPat 178.916 kb on - strand, within ansPat 178.916 kb on - strand, within ansPat 178.988 kb on - strand, within ansPat 179.021 kb on - strand, within ansPat 179.021 kb on - strand, within ansPat 179.161 kb on - strandat 179.161 kb on - strandat 179.206 kb on - strandat 179.342 kb on + strandat 179.345 kb on - strandat 179.345 kb on - strandat 179.345 kb on - strandat 179.366 kb on - strandat 179.384 kb on - strandat 179.417 kb on + strandat 179.468 kb on + strandat 179.468 kb on + strandat 179.489 kb on + strandat 179.490 kb on - strandat 179.536 kb on - strandat 179.536 kb on - strandat 179.575 kb on + strandat 179.581 kb on + strandat 179.581 kb on + strandat 179.582 kb on - strandat 179.589 kb on - strandat 179.589 kb on - strandat 179.632 kb on - strandat 179.632 kb on - strandat 179.704 kb on - strand, within yncGat 179.881 kb on + strand, within yncGat 179.985 kb on - strand, within yncGat 180.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas36
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178,590 - ansP MCAODC_16430 0.52 -1.1
178,690 - ansP MCAODC_16430 0.59 +1.6
178,690 - ansP MCAODC_16430 0.59 +0.7
178,782 - ansP MCAODC_16430 0.65 -0.3
178,833 - ansP MCAODC_16430 0.68 -0.0
178,833 - ansP MCAODC_16430 0.68 +0.4
178,853 + ansP MCAODC_16430 0.70 -0.0
178,913 + ansP MCAODC_16430 0.74 -3.2
178,914 - ansP MCAODC_16430 0.74 -0.9
178,914 - ansP MCAODC_16430 0.74 +0.1
178,915 + ansP MCAODC_16430 0.74 +0.0
178,916 - ansP MCAODC_16430 0.74 +0.4
178,916 - ansP MCAODC_16430 0.74 +0.4
178,916 - ansP MCAODC_16430 0.74 +1.9
178,916 - ansP MCAODC_16430 0.74 +0.5
178,916 - ansP MCAODC_16430 0.74 +2.5
178,916 - ansP MCAODC_16430 0.74 +0.7
178,988 - ansP MCAODC_16430 0.79 +1.1
179,021 - ansP MCAODC_16430 0.81 -0.5
179,021 - ansP MCAODC_16430 0.81 +0.3
179,161 - -0.7
179,161 - +0.1
179,206 - -2.1
179,342 + +0.6
179,345 - -0.2
179,345 - +0.7
179,345 - +0.8
179,366 - +0.1
179,384 - -0.1
179,417 + -0.5
179,468 + +0.9
179,468 + -0.6
179,489 + -2.3
179,490 - -0.4
179,536 - +0.0
179,536 - -0.6
179,575 + +0.1
179,581 + +0.3
179,581 + -0.0
179,582 - -1.3
179,589 - -0.3
179,589 - -1.0
179,632 - -0.1
179,632 - +0.6
179,704 - yncG MCAODC_16435 0.21 -1.3
179,881 + yncG MCAODC_16435 0.49 -0.8
179,985 - yncG MCAODC_16435 0.66 -2.0
180,142 - +0.3

Or see this region's nucleotide sequence