Experiment: WM_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_13535 and MCAODC_13540 are separated by 2 nucleotides MCAODC_13540 and MCAODC_13545 are separated by 9 nucleotides MCAODC_13545 and MCAODC_13550 are separated by 10 nucleotides
MCAODC_13535: MCAODC_13535 - hypothetical protein, at 2,643,042 to 2,643,698
_13535
MCAODC_13540: MCAODC_13540 - hypothetical protein, at 2,643,701 to 2,644,147
_13540
MCAODC_13545: MCAODC_13545 - bacteriocin, at 2,644,157 to 2,644,450
_13545
MCAODC_13550: MCAODC_13550 - hypothetical protein, at 2,644,461 to 2,645,726
_13550
Position (kb)
2644
2645 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2643.165 kb on - strand, within MCAODC_13535 at 2643.215 kb on + strand, within MCAODC_13535 at 2643.215 kb on + strand, within MCAODC_13535 at 2643.215 kb on + strand, within MCAODC_13535 at 2643.216 kb on - strand, within MCAODC_13535 at 2643.216 kb on - strand, within MCAODC_13535 at 2643.407 kb on + strand, within MCAODC_13535 at 2643.408 kb on - strand, within MCAODC_13535 at 2643.408 kb on - strand, within MCAODC_13535 at 2643.408 kb on - strand, within MCAODC_13535 at 2643.411 kb on + strand, within MCAODC_13535 at 2643.411 kb on + strand, within MCAODC_13535 at 2643.411 kb on + strand, within MCAODC_13535 at 2643.411 kb on + strand, within MCAODC_13535 at 2643.411 kb on + strand, within MCAODC_13535 at 2643.411 kb on + strand, within MCAODC_13535 at 2643.412 kb on - strand, within MCAODC_13535 at 2643.412 kb on - strand, within MCAODC_13535 at 2643.412 kb on - strand, within MCAODC_13535 at 2643.412 kb on - strand, within MCAODC_13535 at 2643.412 kb on - strand, within MCAODC_13535 at 2643.412 kb on - strand, within MCAODC_13535 at 2643.586 kb on + strand, within MCAODC_13535 at 2643.586 kb on + strand, within MCAODC_13535 at 2643.594 kb on + strand, within MCAODC_13535 at 2643.594 kb on + strand, within MCAODC_13535 at 2643.595 kb on - strand, within MCAODC_13535 at 2643.605 kb on + strand, within MCAODC_13535 at 2643.605 kb on + strand, within MCAODC_13535 at 2643.605 kb on + strand, within MCAODC_13535 at 2643.606 kb on - strand, within MCAODC_13535 at 2643.606 kb on - strand, within MCAODC_13535 at 2643.638 kb on + strand at 2643.639 kb on - strand at 2643.700 kb on + strand at 2643.701 kb on - strand at 2643.707 kb on + strand at 2643.712 kb on + strand at 2643.716 kb on + strand at 2643.717 kb on - strand at 2643.734 kb on + strand at 2643.742 kb on + strand at 2643.803 kb on + strand, within MCAODC_13540 at 2643.803 kb on + strand, within MCAODC_13540 at 2643.804 kb on - strand, within MCAODC_13540 at 2643.824 kb on + strand, within MCAODC_13540 at 2643.825 kb on - strand, within MCAODC_13540 at 2643.825 kb on - strand, within MCAODC_13540 at 2643.825 kb on - strand, within MCAODC_13540 at 2643.828 kb on + strand, within MCAODC_13540 at 2643.838 kb on - strand, within MCAODC_13540 at 2643.994 kb on + strand, within MCAODC_13540 at 2643.994 kb on + strand, within MCAODC_13540 at 2643.994 kb on + strand, within MCAODC_13540 at 2643.997 kb on + strand, within MCAODC_13540 at 2643.998 kb on - strand, within MCAODC_13540 at 2643.998 kb on - strand, within MCAODC_13540 at 2643.998 kb on - strand, within MCAODC_13540 at 2644.008 kb on + strand, within MCAODC_13540 at 2644.012 kb on + strand, within MCAODC_13540 at 2644.012 kb on + strand, within MCAODC_13540 at 2644.079 kb on - strand, within MCAODC_13540 at 2644.146 kb on - strand at 2644.156 kb on + strand at 2644.163 kb on + strand at 2644.177 kb on + strand at 2644.177 kb on + strand at 2644.216 kb on - strand, within MCAODC_13545 at 2644.216 kb on - strand, within MCAODC_13545 at 2644.216 kb on - strand, within MCAODC_13545 at 2644.448 kb on + strand at 2644.483 kb on + strand at 2644.484 kb on - strand at 2644.484 kb on - strand at 2644.484 kb on - strand at 2644.526 kb on + strand at 2644.638 kb on - strand, within MCAODC_13550 at 2644.638 kb on - strand, within MCAODC_13550 at 2644.638 kb on - strand, within MCAODC_13550 at 2644.641 kb on + strand, within MCAODC_13550 at 2644.641 kb on + strand, within MCAODC_13550 at 2644.641 kb on + strand, within MCAODC_13550 at 2644.641 kb on + strand, within MCAODC_13550 at 2644.641 kb on + strand, within MCAODC_13550 at 2644.641 kb on + strand, within MCAODC_13550 at 2644.641 kb on + strand, within MCAODC_13550 at 2644.641 kb on + strand, within MCAODC_13550 at 2644.642 kb on - strand, within MCAODC_13550 at 2644.642 kb on - strand, within MCAODC_13550 at 2644.642 kb on - strand, within MCAODC_13550 at 2644.642 kb on - strand, within MCAODC_13550 at 2644.642 kb on - strand, within MCAODC_13550 at 2644.642 kb on - strand, within MCAODC_13550 at 2644.649 kb on + strand, within MCAODC_13550 at 2644.675 kb on - strand, within MCAODC_13550 at 2644.764 kb on + strand, within MCAODC_13550 at 2644.765 kb on - strand, within MCAODC_13550 at 2644.785 kb on + strand, within MCAODC_13550 at 2644.786 kb on - strand, within MCAODC_13550 at 2644.786 kb on - strand, within MCAODC_13550 at 2644.786 kb on - strand, within MCAODC_13550 at 2644.787 kb on + strand, within MCAODC_13550 at 2644.787 kb on + strand, within MCAODC_13550 at 2644.787 kb on + strand, within MCAODC_13550 at 2644.788 kb on - strand, within MCAODC_13550 at 2644.793 kb on + strand, within MCAODC_13550 at 2644.793 kb on + strand, within MCAODC_13550 at 2644.793 kb on + strand, within MCAODC_13550 at 2644.793 kb on + strand, within MCAODC_13550 at 2644.793 kb on + strand, within MCAODC_13550 at 2644.794 kb on - strand, within MCAODC_13550 at 2644.904 kb on - strand, within MCAODC_13550 at 2644.904 kb on - strand, within MCAODC_13550 at 2644.910 kb on + strand, within MCAODC_13550 at 2644.911 kb on - strand, within MCAODC_13550 at 2644.927 kb on - strand, within MCAODC_13550 at 2645.056 kb on + strand, within MCAODC_13550 at 2645.056 kb on + strand, within MCAODC_13550 at 2645.057 kb on - strand, within MCAODC_13550 at 2645.066 kb on + strand, within MCAODC_13550 at 2645.066 kb on + strand, within MCAODC_13550 at 2645.148 kb on + strand, within MCAODC_13550 at 2645.148 kb on + strand, within MCAODC_13550 at 2645.152 kb on + strand, within MCAODC_13550 at 2645.152 kb on + strand, within MCAODC_13550 at 2645.152 kb on + strand, within MCAODC_13550 at 2645.152 kb on + strand, within MCAODC_13550 at 2645.153 kb on - strand, within MCAODC_13550 at 2645.153 kb on - strand, within MCAODC_13550 at 2645.153 kb on - strand, within MCAODC_13550 at 2645.156 kb on + strand, within MCAODC_13550 at 2645.157 kb on - strand, within MCAODC_13550 at 2645.157 kb on - strand, within MCAODC_13550 at 2645.175 kb on + strand, within MCAODC_13550 at 2645.199 kb on - strand, within MCAODC_13550 at 2645.199 kb on - strand, within MCAODC_13550 at 2645.199 kb on - strand, within MCAODC_13550 at 2645.214 kb on + strand, within MCAODC_13550 at 2645.264 kb on + strand, within MCAODC_13550 at 2645.325 kb on + strand, within MCAODC_13550 at 2645.325 kb on + strand, within MCAODC_13550 at 2645.326 kb on - strand, within MCAODC_13550 at 2645.386 kb on + strand, within MCAODC_13550 at 2645.439 kb on + strand, within MCAODC_13550 at 2645.442 kb on + strand, within MCAODC_13550 at 2645.442 kb on + strand, within MCAODC_13550 at 2645.443 kb on - strand, within MCAODC_13550
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas36 remove 2,643,165 - MCAODC_13535 0.19 -0.7 2,643,215 + MCAODC_13535 0.26 -0.5 2,643,215 + MCAODC_13535 0.26 +0.2 2,643,215 + MCAODC_13535 0.26 -0.6 2,643,216 - MCAODC_13535 0.26 -1.7 2,643,216 - MCAODC_13535 0.26 +0.9 2,643,407 + MCAODC_13535 0.56 -1.3 2,643,408 - MCAODC_13535 0.56 +0.4 2,643,408 - MCAODC_13535 0.56 +0.2 2,643,408 - MCAODC_13535 0.56 +0.3 2,643,411 + MCAODC_13535 0.56 -0.9 2,643,411 + MCAODC_13535 0.56 +1.0 2,643,411 + MCAODC_13535 0.56 -0.9 2,643,411 + MCAODC_13535 0.56 -1.2 2,643,411 + MCAODC_13535 0.56 +0.6 2,643,411 + MCAODC_13535 0.56 -0.6 2,643,412 - MCAODC_13535 0.56 -1.0 2,643,412 - MCAODC_13535 0.56 -0.3 2,643,412 - MCAODC_13535 0.56 +0.1 2,643,412 - MCAODC_13535 0.56 -0.9 2,643,412 - MCAODC_13535 0.56 -1.2 2,643,412 - MCAODC_13535 0.56 +1.9 2,643,586 + MCAODC_13535 0.83 -0.6 2,643,586 + MCAODC_13535 0.83 -1.9 2,643,594 + MCAODC_13535 0.84 -0.8 2,643,594 + MCAODC_13535 0.84 -0.5 2,643,595 - MCAODC_13535 0.84 -1.0 2,643,605 + MCAODC_13535 0.86 +0.5 2,643,605 + MCAODC_13535 0.86 -1.4 2,643,605 + MCAODC_13535 0.86 -0.4 2,643,606 - MCAODC_13535 0.86 -0.2 2,643,606 - MCAODC_13535 0.86 -1.0 2,643,638 + -1.0 2,643,639 - -0.1 2,643,700 + -0.0 2,643,701 - -0.7 2,643,707 + -1.2 2,643,712 + +0.8 2,643,716 + -1.7 2,643,717 - -0.9 2,643,734 + -1.0 2,643,742 + +0.2 2,643,803 + MCAODC_13540 0.23 +0.3 2,643,803 + MCAODC_13540 0.23 -0.9 2,643,804 - MCAODC_13540 0.23 -0.1 2,643,824 + MCAODC_13540 0.28 -1.3 2,643,825 - MCAODC_13540 0.28 -1.5 2,643,825 - MCAODC_13540 0.28 -0.2 2,643,825 - MCAODC_13540 0.28 -0.8 2,643,828 + MCAODC_13540 0.28 -1.0 2,643,838 - MCAODC_13540 0.31 +0.4 2,643,994 + MCAODC_13540 0.66 +0.6 2,643,994 + MCAODC_13540 0.66 -1.3 2,643,994 + MCAODC_13540 0.66 -0.0 2,643,997 + MCAODC_13540 0.66 -0.8 2,643,998 - MCAODC_13540 0.66 -0.4 2,643,998 - MCAODC_13540 0.66 -0.2 2,643,998 - MCAODC_13540 0.66 -0.2 2,644,008 + MCAODC_13540 0.69 +0.8 2,644,012 + MCAODC_13540 0.70 -0.7 2,644,012 + MCAODC_13540 0.70 -1.0 2,644,079 - MCAODC_13540 0.85 -0.5 2,644,146 - +0.9 2,644,156 + -0.4 2,644,163 + +0.5 2,644,177 + -0.2 2,644,177 + -0.7 2,644,216 - MCAODC_13545 0.20 -1.1 2,644,216 - MCAODC_13545 0.20 -0.3 2,644,216 - MCAODC_13545 0.20 -2.8 2,644,448 + -1.2 2,644,483 + +0.5 2,644,484 - -0.8 2,644,484 - -1.8 2,644,484 - -1.3 2,644,526 + -0.2 2,644,638 - MCAODC_13550 0.14 -0.0 2,644,638 - MCAODC_13550 0.14 -1.8 2,644,638 - MCAODC_13550 0.14 -1.0 2,644,641 + MCAODC_13550 0.14 -0.7 2,644,641 + MCAODC_13550 0.14 -0.6 2,644,641 + MCAODC_13550 0.14 -0.8 2,644,641 + MCAODC_13550 0.14 -0.4 2,644,641 + MCAODC_13550 0.14 -0.1 2,644,641 + MCAODC_13550 0.14 +0.8 2,644,641 + MCAODC_13550 0.14 -0.2 2,644,641 + MCAODC_13550 0.14 -1.1 2,644,642 - MCAODC_13550 0.14 +0.7 2,644,642 - MCAODC_13550 0.14 +0.4 2,644,642 - MCAODC_13550 0.14 -0.4 2,644,642 - MCAODC_13550 0.14 +0.1 2,644,642 - MCAODC_13550 0.14 -0.5 2,644,642 - MCAODC_13550 0.14 +1.4 2,644,649 + MCAODC_13550 0.15 -0.3 2,644,675 - MCAODC_13550 0.17 +0.1 2,644,764 + MCAODC_13550 0.24 -0.7 2,644,765 - MCAODC_13550 0.24 -0.5 2,644,785 + MCAODC_13550 0.26 -1.5 2,644,786 - MCAODC_13550 0.26 -1.4 2,644,786 - MCAODC_13550 0.26 +0.2 2,644,786 - MCAODC_13550 0.26 +0.5 2,644,787 + MCAODC_13550 0.26 -1.4 2,644,787 + MCAODC_13550 0.26 +0.6 2,644,787 + MCAODC_13550 0.26 -0.7 2,644,788 - MCAODC_13550 0.26 -0.7 2,644,793 + MCAODC_13550 0.26 -0.4 2,644,793 + MCAODC_13550 0.26 +0.6 2,644,793 + MCAODC_13550 0.26 +0.9 2,644,793 + MCAODC_13550 0.26 +0.8 2,644,793 + MCAODC_13550 0.26 -1.7 2,644,794 - MCAODC_13550 0.26 -0.9 2,644,904 - MCAODC_13550 0.35 -0.9 2,644,904 - MCAODC_13550 0.35 -0.7 2,644,910 + MCAODC_13550 0.35 -0.5 2,644,911 - MCAODC_13550 0.36 +0.1 2,644,927 - MCAODC_13550 0.37 -0.2 2,645,056 + MCAODC_13550 0.47 -1.4 2,645,056 + MCAODC_13550 0.47 +0.4 2,645,057 - MCAODC_13550 0.47 -0.7 2,645,066 + MCAODC_13550 0.48 +1.0 2,645,066 + MCAODC_13550 0.48 -0.8 2,645,148 + MCAODC_13550 0.54 -1.2 2,645,148 + MCAODC_13550 0.54 -0.6 2,645,152 + MCAODC_13550 0.55 +0.6 2,645,152 + MCAODC_13550 0.55 +0.0 2,645,152 + MCAODC_13550 0.55 -1.1 2,645,152 + MCAODC_13550 0.55 -0.5 2,645,153 - MCAODC_13550 0.55 -0.2 2,645,153 - MCAODC_13550 0.55 -0.6 2,645,153 - MCAODC_13550 0.55 -2.4 2,645,156 + MCAODC_13550 0.55 -0.3 2,645,157 - MCAODC_13550 0.55 -1.2 2,645,157 - MCAODC_13550 0.55 -0.8 2,645,175 + MCAODC_13550 0.56 -1.1 2,645,199 - MCAODC_13550 0.58 +0.0 2,645,199 - MCAODC_13550 0.58 +0.0 2,645,199 - MCAODC_13550 0.58 -0.4 2,645,214 + MCAODC_13550 0.59 -1.6 2,645,264 + MCAODC_13550 0.63 +0.4 2,645,325 + MCAODC_13550 0.68 +0.1 2,645,325 + MCAODC_13550 0.68 -0.1 2,645,326 - MCAODC_13550 0.68 -0.5 2,645,386 + MCAODC_13550 0.73 -0.9 2,645,439 + MCAODC_13550 0.77 -2.0 2,645,442 + MCAODC_13550 0.77 +1.9 2,645,442 + MCAODC_13550 0.77 -1.2 2,645,443 - MCAODC_13550 0.78 -0.4
Or see this region's nucleotide sequence