Strain Fitness in Escherichia coli ECRC101 around MCAODC_13545

Experiment: WM_Bas36

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_13535 and MCAODC_13540 are separated by 2 nucleotidesMCAODC_13540 and MCAODC_13545 are separated by 9 nucleotidesMCAODC_13545 and MCAODC_13550 are separated by 10 nucleotides MCAODC_13535: MCAODC_13535 - hypothetical protein, at 2,643,042 to 2,643,698 _13535 MCAODC_13540: MCAODC_13540 - hypothetical protein, at 2,643,701 to 2,644,147 _13540 MCAODC_13545: MCAODC_13545 - bacteriocin, at 2,644,157 to 2,644,450 _13545 MCAODC_13550: MCAODC_13550 - hypothetical protein, at 2,644,461 to 2,645,726 _13550 Position (kb) 2644 2645Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2643.165 kb on - strand, within MCAODC_13535at 2643.215 kb on + strand, within MCAODC_13535at 2643.215 kb on + strand, within MCAODC_13535at 2643.215 kb on + strand, within MCAODC_13535at 2643.216 kb on - strand, within MCAODC_13535at 2643.216 kb on - strand, within MCAODC_13535at 2643.407 kb on + strand, within MCAODC_13535at 2643.408 kb on - strand, within MCAODC_13535at 2643.408 kb on - strand, within MCAODC_13535at 2643.408 kb on - strand, within MCAODC_13535at 2643.411 kb on + strand, within MCAODC_13535at 2643.411 kb on + strand, within MCAODC_13535at 2643.411 kb on + strand, within MCAODC_13535at 2643.411 kb on + strand, within MCAODC_13535at 2643.411 kb on + strand, within MCAODC_13535at 2643.411 kb on + strand, within MCAODC_13535at 2643.412 kb on - strand, within MCAODC_13535at 2643.412 kb on - strand, within MCAODC_13535at 2643.412 kb on - strand, within MCAODC_13535at 2643.412 kb on - strand, within MCAODC_13535at 2643.412 kb on - strand, within MCAODC_13535at 2643.412 kb on - strand, within MCAODC_13535at 2643.586 kb on + strand, within MCAODC_13535at 2643.586 kb on + strand, within MCAODC_13535at 2643.594 kb on + strand, within MCAODC_13535at 2643.594 kb on + strand, within MCAODC_13535at 2643.595 kb on - strand, within MCAODC_13535at 2643.605 kb on + strand, within MCAODC_13535at 2643.605 kb on + strand, within MCAODC_13535at 2643.605 kb on + strand, within MCAODC_13535at 2643.606 kb on - strand, within MCAODC_13535at 2643.606 kb on - strand, within MCAODC_13535at 2643.638 kb on + strandat 2643.639 kb on - strandat 2643.700 kb on + strandat 2643.701 kb on - strandat 2643.707 kb on + strandat 2643.712 kb on + strandat 2643.716 kb on + strandat 2643.717 kb on - strandat 2643.734 kb on + strandat 2643.742 kb on + strandat 2643.803 kb on + strand, within MCAODC_13540at 2643.803 kb on + strand, within MCAODC_13540at 2643.804 kb on - strand, within MCAODC_13540at 2643.824 kb on + strand, within MCAODC_13540at 2643.825 kb on - strand, within MCAODC_13540at 2643.825 kb on - strand, within MCAODC_13540at 2643.825 kb on - strand, within MCAODC_13540at 2643.828 kb on + strand, within MCAODC_13540at 2643.838 kb on - strand, within MCAODC_13540at 2643.994 kb on + strand, within MCAODC_13540at 2643.994 kb on + strand, within MCAODC_13540at 2643.994 kb on + strand, within MCAODC_13540at 2643.997 kb on + strand, within MCAODC_13540at 2643.998 kb on - strand, within MCAODC_13540at 2643.998 kb on - strand, within MCAODC_13540at 2643.998 kb on - strand, within MCAODC_13540at 2644.008 kb on + strand, within MCAODC_13540at 2644.012 kb on + strand, within MCAODC_13540at 2644.012 kb on + strand, within MCAODC_13540at 2644.079 kb on - strand, within MCAODC_13540at 2644.146 kb on - strandat 2644.156 kb on + strandat 2644.163 kb on + strandat 2644.177 kb on + strandat 2644.177 kb on + strandat 2644.216 kb on - strand, within MCAODC_13545at 2644.216 kb on - strand, within MCAODC_13545at 2644.216 kb on - strand, within MCAODC_13545at 2644.448 kb on + strandat 2644.483 kb on + strandat 2644.484 kb on - strandat 2644.484 kb on - strandat 2644.484 kb on - strandat 2644.526 kb on + strandat 2644.638 kb on - strand, within MCAODC_13550at 2644.638 kb on - strand, within MCAODC_13550at 2644.638 kb on - strand, within MCAODC_13550at 2644.641 kb on + strand, within MCAODC_13550at 2644.641 kb on + strand, within MCAODC_13550at 2644.641 kb on + strand, within MCAODC_13550at 2644.641 kb on + strand, within MCAODC_13550at 2644.641 kb on + strand, within MCAODC_13550at 2644.641 kb on + strand, within MCAODC_13550at 2644.641 kb on + strand, within MCAODC_13550at 2644.641 kb on + strand, within MCAODC_13550at 2644.642 kb on - strand, within MCAODC_13550at 2644.642 kb on - strand, within MCAODC_13550at 2644.642 kb on - strand, within MCAODC_13550at 2644.642 kb on - strand, within MCAODC_13550at 2644.642 kb on - strand, within MCAODC_13550at 2644.642 kb on - strand, within MCAODC_13550at 2644.649 kb on + strand, within MCAODC_13550at 2644.675 kb on - strand, within MCAODC_13550at 2644.764 kb on + strand, within MCAODC_13550at 2644.765 kb on - strand, within MCAODC_13550at 2644.785 kb on + strand, within MCAODC_13550at 2644.786 kb on - strand, within MCAODC_13550at 2644.786 kb on - strand, within MCAODC_13550at 2644.786 kb on - strand, within MCAODC_13550at 2644.787 kb on + strand, within MCAODC_13550at 2644.787 kb on + strand, within MCAODC_13550at 2644.787 kb on + strand, within MCAODC_13550at 2644.788 kb on - strand, within MCAODC_13550at 2644.793 kb on + strand, within MCAODC_13550at 2644.793 kb on + strand, within MCAODC_13550at 2644.793 kb on + strand, within MCAODC_13550at 2644.793 kb on + strand, within MCAODC_13550at 2644.793 kb on + strand, within MCAODC_13550at 2644.794 kb on - strand, within MCAODC_13550at 2644.904 kb on - strand, within MCAODC_13550at 2644.904 kb on - strand, within MCAODC_13550at 2644.910 kb on + strand, within MCAODC_13550at 2644.911 kb on - strand, within MCAODC_13550at 2644.927 kb on - strand, within MCAODC_13550at 2645.056 kb on + strand, within MCAODC_13550at 2645.056 kb on + strand, within MCAODC_13550at 2645.057 kb on - strand, within MCAODC_13550at 2645.066 kb on + strand, within MCAODC_13550at 2645.066 kb on + strand, within MCAODC_13550at 2645.148 kb on + strand, within MCAODC_13550at 2645.148 kb on + strand, within MCAODC_13550at 2645.152 kb on + strand, within MCAODC_13550at 2645.152 kb on + strand, within MCAODC_13550at 2645.152 kb on + strand, within MCAODC_13550at 2645.152 kb on + strand, within MCAODC_13550at 2645.153 kb on - strand, within MCAODC_13550at 2645.153 kb on - strand, within MCAODC_13550at 2645.153 kb on - strand, within MCAODC_13550at 2645.156 kb on + strand, within MCAODC_13550at 2645.157 kb on - strand, within MCAODC_13550at 2645.157 kb on - strand, within MCAODC_13550at 2645.175 kb on + strand, within MCAODC_13550at 2645.199 kb on - strand, within MCAODC_13550at 2645.199 kb on - strand, within MCAODC_13550at 2645.199 kb on - strand, within MCAODC_13550at 2645.214 kb on + strand, within MCAODC_13550at 2645.264 kb on + strand, within MCAODC_13550at 2645.325 kb on + strand, within MCAODC_13550at 2645.325 kb on + strand, within MCAODC_13550at 2645.326 kb on - strand, within MCAODC_13550at 2645.386 kb on + strand, within MCAODC_13550at 2645.439 kb on + strand, within MCAODC_13550at 2645.442 kb on + strand, within MCAODC_13550at 2645.442 kb on + strand, within MCAODC_13550at 2645.443 kb on - strand, within MCAODC_13550

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas36
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2,643,165 - MCAODC_13535 0.19 -0.7
2,643,215 + MCAODC_13535 0.26 -0.5
2,643,215 + MCAODC_13535 0.26 +0.2
2,643,215 + MCAODC_13535 0.26 -0.6
2,643,216 - MCAODC_13535 0.26 -1.7
2,643,216 - MCAODC_13535 0.26 +0.9
2,643,407 + MCAODC_13535 0.56 -1.3
2,643,408 - MCAODC_13535 0.56 +0.4
2,643,408 - MCAODC_13535 0.56 +0.2
2,643,408 - MCAODC_13535 0.56 +0.3
2,643,411 + MCAODC_13535 0.56 -0.9
2,643,411 + MCAODC_13535 0.56 +1.0
2,643,411 + MCAODC_13535 0.56 -0.9
2,643,411 + MCAODC_13535 0.56 -1.2
2,643,411 + MCAODC_13535 0.56 +0.6
2,643,411 + MCAODC_13535 0.56 -0.6
2,643,412 - MCAODC_13535 0.56 -1.0
2,643,412 - MCAODC_13535 0.56 -0.3
2,643,412 - MCAODC_13535 0.56 +0.1
2,643,412 - MCAODC_13535 0.56 -0.9
2,643,412 - MCAODC_13535 0.56 -1.2
2,643,412 - MCAODC_13535 0.56 +1.9
2,643,586 + MCAODC_13535 0.83 -0.6
2,643,586 + MCAODC_13535 0.83 -1.9
2,643,594 + MCAODC_13535 0.84 -0.8
2,643,594 + MCAODC_13535 0.84 -0.5
2,643,595 - MCAODC_13535 0.84 -1.0
2,643,605 + MCAODC_13535 0.86 +0.5
2,643,605 + MCAODC_13535 0.86 -1.4
2,643,605 + MCAODC_13535 0.86 -0.4
2,643,606 - MCAODC_13535 0.86 -0.2
2,643,606 - MCAODC_13535 0.86 -1.0
2,643,638 + -1.0
2,643,639 - -0.1
2,643,700 + -0.0
2,643,701 - -0.7
2,643,707 + -1.2
2,643,712 + +0.8
2,643,716 + -1.7
2,643,717 - -0.9
2,643,734 + -1.0
2,643,742 + +0.2
2,643,803 + MCAODC_13540 0.23 +0.3
2,643,803 + MCAODC_13540 0.23 -0.9
2,643,804 - MCAODC_13540 0.23 -0.1
2,643,824 + MCAODC_13540 0.28 -1.3
2,643,825 - MCAODC_13540 0.28 -1.5
2,643,825 - MCAODC_13540 0.28 -0.2
2,643,825 - MCAODC_13540 0.28 -0.8
2,643,828 + MCAODC_13540 0.28 -1.0
2,643,838 - MCAODC_13540 0.31 +0.4
2,643,994 + MCAODC_13540 0.66 +0.6
2,643,994 + MCAODC_13540 0.66 -1.3
2,643,994 + MCAODC_13540 0.66 -0.0
2,643,997 + MCAODC_13540 0.66 -0.8
2,643,998 - MCAODC_13540 0.66 -0.4
2,643,998 - MCAODC_13540 0.66 -0.2
2,643,998 - MCAODC_13540 0.66 -0.2
2,644,008 + MCAODC_13540 0.69 +0.8
2,644,012 + MCAODC_13540 0.70 -0.7
2,644,012 + MCAODC_13540 0.70 -1.0
2,644,079 - MCAODC_13540 0.85 -0.5
2,644,146 - +0.9
2,644,156 + -0.4
2,644,163 + +0.5
2,644,177 + -0.2
2,644,177 + -0.7
2,644,216 - MCAODC_13545 0.20 -1.1
2,644,216 - MCAODC_13545 0.20 -0.3
2,644,216 - MCAODC_13545 0.20 -2.8
2,644,448 + -1.2
2,644,483 + +0.5
2,644,484 - -0.8
2,644,484 - -1.8
2,644,484 - -1.3
2,644,526 + -0.2
2,644,638 - MCAODC_13550 0.14 -0.0
2,644,638 - MCAODC_13550 0.14 -1.8
2,644,638 - MCAODC_13550 0.14 -1.0
2,644,641 + MCAODC_13550 0.14 -0.7
2,644,641 + MCAODC_13550 0.14 -0.6
2,644,641 + MCAODC_13550 0.14 -0.8
2,644,641 + MCAODC_13550 0.14 -0.4
2,644,641 + MCAODC_13550 0.14 -0.1
2,644,641 + MCAODC_13550 0.14 +0.8
2,644,641 + MCAODC_13550 0.14 -0.2
2,644,641 + MCAODC_13550 0.14 -1.1
2,644,642 - MCAODC_13550 0.14 +0.7
2,644,642 - MCAODC_13550 0.14 +0.4
2,644,642 - MCAODC_13550 0.14 -0.4
2,644,642 - MCAODC_13550 0.14 +0.1
2,644,642 - MCAODC_13550 0.14 -0.5
2,644,642 - MCAODC_13550 0.14 +1.4
2,644,649 + MCAODC_13550 0.15 -0.3
2,644,675 - MCAODC_13550 0.17 +0.1
2,644,764 + MCAODC_13550 0.24 -0.7
2,644,765 - MCAODC_13550 0.24 -0.5
2,644,785 + MCAODC_13550 0.26 -1.5
2,644,786 - MCAODC_13550 0.26 -1.4
2,644,786 - MCAODC_13550 0.26 +0.2
2,644,786 - MCAODC_13550 0.26 +0.5
2,644,787 + MCAODC_13550 0.26 -1.4
2,644,787 + MCAODC_13550 0.26 +0.6
2,644,787 + MCAODC_13550 0.26 -0.7
2,644,788 - MCAODC_13550 0.26 -0.7
2,644,793 + MCAODC_13550 0.26 -0.4
2,644,793 + MCAODC_13550 0.26 +0.6
2,644,793 + MCAODC_13550 0.26 +0.9
2,644,793 + MCAODC_13550 0.26 +0.8
2,644,793 + MCAODC_13550 0.26 -1.7
2,644,794 - MCAODC_13550 0.26 -0.9
2,644,904 - MCAODC_13550 0.35 -0.9
2,644,904 - MCAODC_13550 0.35 -0.7
2,644,910 + MCAODC_13550 0.35 -0.5
2,644,911 - MCAODC_13550 0.36 +0.1
2,644,927 - MCAODC_13550 0.37 -0.2
2,645,056 + MCAODC_13550 0.47 -1.4
2,645,056 + MCAODC_13550 0.47 +0.4
2,645,057 - MCAODC_13550 0.47 -0.7
2,645,066 + MCAODC_13550 0.48 +1.0
2,645,066 + MCAODC_13550 0.48 -0.8
2,645,148 + MCAODC_13550 0.54 -1.2
2,645,148 + MCAODC_13550 0.54 -0.6
2,645,152 + MCAODC_13550 0.55 +0.6
2,645,152 + MCAODC_13550 0.55 +0.0
2,645,152 + MCAODC_13550 0.55 -1.1
2,645,152 + MCAODC_13550 0.55 -0.5
2,645,153 - MCAODC_13550 0.55 -0.2
2,645,153 - MCAODC_13550 0.55 -0.6
2,645,153 - MCAODC_13550 0.55 -2.4
2,645,156 + MCAODC_13550 0.55 -0.3
2,645,157 - MCAODC_13550 0.55 -1.2
2,645,157 - MCAODC_13550 0.55 -0.8
2,645,175 + MCAODC_13550 0.56 -1.1
2,645,199 - MCAODC_13550 0.58 +0.0
2,645,199 - MCAODC_13550 0.58 +0.0
2,645,199 - MCAODC_13550 0.58 -0.4
2,645,214 + MCAODC_13550 0.59 -1.6
2,645,264 + MCAODC_13550 0.63 +0.4
2,645,325 + MCAODC_13550 0.68 +0.1
2,645,325 + MCAODC_13550 0.68 -0.1
2,645,326 - MCAODC_13550 0.68 -0.5
2,645,386 + MCAODC_13550 0.73 -0.9
2,645,439 + MCAODC_13550 0.77 -2.0
2,645,442 + MCAODC_13550 0.77 +1.9
2,645,442 + MCAODC_13550 0.77 -1.2
2,645,443 - MCAODC_13550 0.78 -0.4

Or see this region's nucleotide sequence