Experiment: WM_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafL and dinJ are separated by 185 nucleotides dinJ and dpaA are separated by 434 nucleotides
MCAODC_00275: yafL - putative endopeptidase YafL, at 29,168 to 29,941
yafL
MCAODC_00280: dinJ - type II toxin-antitoxin system antitoxin DinJ, at 30,127 to 30,387
dinJ
MCAODC_00285: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 30,822 to 31,562
dpaA
Position (kb) 30
31 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 29.281 kb on + strand, within yafL at 29.301 kb on + strand, within yafL at 29.302 kb on - strand, within yafL at 29.302 kb on - strand, within yafL at 29.302 kb on - strand, within yafL at 29.311 kb on + strand, within yafL at 29.400 kb on + strand, within yafL at 29.406 kb on + strand, within yafL at 29.406 kb on + strand, within yafL at 29.406 kb on + strand, within yafL at 29.406 kb on + strand, within yafL at 29.406 kb on + strand, within yafL at 29.407 kb on - strand, within yafL at 29.407 kb on - strand, within yafL at 29.407 kb on - strand, within yafL at 29.407 kb on - strand, within yafL at 29.407 kb on - strand, within yafL at 29.454 kb on + strand, within yafL at 29.454 kb on + strand, within yafL at 29.455 kb on - strand, within yafL at 29.455 kb on - strand, within yafL at 29.517 kb on + strand, within yafL at 29.517 kb on + strand, within yafL at 29.518 kb on - strand, within yafL at 29.569 kb on + strand, within yafL at 29.569 kb on + strand, within yafL at 29.672 kb on + strand, within yafL at 29.673 kb on - strand, within yafL at 29.733 kb on + strand, within yafL at 29.733 kb on + strand, within yafL at 29.734 kb on - strand, within yafL at 29.734 kb on - strand, within yafL at 29.734 kb on - strand, within yafL at 29.734 kb on - strand, within yafL at 29.772 kb on - strand, within yafL at 29.812 kb on - strand, within yafL at 29.812 kb on - strand, within yafL at 29.824 kb on + strand, within yafL at 29.824 kb on + strand, within yafL at 29.824 kb on + strand, within yafL at 29.824 kb on + strand, within yafL at 29.824 kb on + strand, within yafL at 29.825 kb on - strand, within yafL at 29.825 kb on - strand, within yafL at 29.876 kb on + strand at 29.888 kb on + strand at 29.889 kb on - strand at 29.889 kb on - strand at 29.981 kb on + strand at 29.981 kb on + strand at 30.013 kb on - strand at 30.057 kb on + strand at 30.058 kb on - strand at 30.058 kb on - strand at 30.058 kb on - strand at 30.100 kb on + strand at 30.101 kb on - strand at 30.120 kb on + strand at 30.121 kb on - strand at 30.121 kb on - strand at 30.135 kb on + strand at 30.191 kb on + strand, within dinJ at 30.233 kb on + strand, within dinJ at 30.279 kb on - strand, within dinJ at 30.288 kb on + strand, within dinJ at 30.289 kb on - strand, within dinJ at 30.297 kb on - strand, within dinJ at 30.297 kb on - strand, within dinJ at 30.342 kb on + strand, within dinJ at 30.365 kb on + strand at 30.373 kb on - strand at 30.385 kb on + strand at 30.385 kb on + strand at 30.389 kb on + strand at 30.389 kb on + strand at 30.501 kb on + strand at 30.504 kb on + strand at 30.526 kb on + strand at 30.527 kb on - strand at 30.527 kb on - strand at 30.527 kb on - strand at 30.623 kb on + strand at 30.624 kb on - strand at 30.714 kb on + strand at 30.715 kb on - strand at 30.732 kb on - strand at 30.757 kb on - strand at 30.805 kb on - strand at 30.814 kb on + strand at 30.815 kb on - strand at 30.815 kb on - strand at 30.815 kb on - strand at 30.821 kb on + strand at 30.822 kb on - strand at 30.896 kb on + strand, within dpaA at 30.924 kb on + strand, within dpaA at 30.924 kb on + strand, within dpaA at 30.924 kb on + strand, within dpaA at 30.925 kb on - strand, within dpaA at 30.925 kb on - strand, within dpaA at 30.925 kb on - strand, within dpaA at 30.926 kb on + strand, within dpaA at 30.926 kb on + strand, within dpaA at 30.926 kb on + strand, within dpaA at 30.927 kb on - strand, within dpaA at 30.954 kb on + strand, within dpaA at 30.954 kb on + strand, within dpaA at 30.955 kb on - strand, within dpaA at 30.980 kb on + strand, within dpaA at 30.980 kb on + strand, within dpaA at 30.980 kb on + strand, within dpaA at 30.993 kb on + strand, within dpaA at 30.993 kb on + strand, within dpaA at 30.994 kb on - strand, within dpaA at 30.994 kb on - strand, within dpaA at 31.033 kb on - strand, within dpaA at 31.034 kb on + strand, within dpaA at 31.048 kb on - strand, within dpaA at 31.108 kb on - strand, within dpaA at 31.110 kb on - strand, within dpaA at 31.122 kb on - strand, within dpaA at 31.147 kb on - strand, within dpaA at 31.149 kb on + strand, within dpaA at 31.149 kb on + strand, within dpaA at 31.150 kb on - strand, within dpaA at 31.163 kb on + strand, within dpaA at 31.164 kb on - strand, within dpaA at 31.164 kb on - strand, within dpaA at 31.164 kb on - strand, within dpaA at 31.164 kb on - strand, within dpaA at 31.182 kb on + strand, within dpaA at 31.182 kb on + strand, within dpaA at 31.182 kb on + strand, within dpaA at 31.200 kb on + strand, within dpaA at 31.309 kb on + strand, within dpaA at 31.309 kb on + strand, within dpaA at 31.342 kb on - strand, within dpaA at 31.379 kb on + strand, within dpaA at 31.379 kb on + strand, within dpaA at 31.383 kb on + strand, within dpaA at 31.383 kb on + strand, within dpaA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas36 remove 29,281 + yafL MCAODC_00275 0.15 +0.4 29,301 + yafL MCAODC_00275 0.17 +0.3 29,302 - yafL MCAODC_00275 0.17 +0.2 29,302 - yafL MCAODC_00275 0.17 -3.1 29,302 - yafL MCAODC_00275 0.17 -0.2 29,311 + yafL MCAODC_00275 0.18 +0.8 29,400 + yafL MCAODC_00275 0.30 +0.1 29,406 + yafL MCAODC_00275 0.31 -0.8 29,406 + yafL MCAODC_00275 0.31 -0.4 29,406 + yafL MCAODC_00275 0.31 -0.1 29,406 + yafL MCAODC_00275 0.31 -0.2 29,406 + yafL MCAODC_00275 0.31 -1.2 29,407 - yafL MCAODC_00275 0.31 -0.5 29,407 - yafL MCAODC_00275 0.31 -0.4 29,407 - yafL MCAODC_00275 0.31 -0.1 29,407 - yafL MCAODC_00275 0.31 +0.1 29,407 - yafL MCAODC_00275 0.31 +0.2 29,454 + yafL MCAODC_00275 0.37 -2.3 29,454 + yafL MCAODC_00275 0.37 -0.0 29,455 - yafL MCAODC_00275 0.37 +2.6 29,455 - yafL MCAODC_00275 0.37 -0.7 29,517 + yafL MCAODC_00275 0.45 -2.1 29,517 + yafL MCAODC_00275 0.45 +0.1 29,518 - yafL MCAODC_00275 0.45 -0.3 29,569 + yafL MCAODC_00275 0.52 +0.2 29,569 + yafL MCAODC_00275 0.52 -0.2 29,672 + yafL MCAODC_00275 0.65 +0.2 29,673 - yafL MCAODC_00275 0.65 -1.9 29,733 + yafL MCAODC_00275 0.73 -3.2 29,733 + yafL MCAODC_00275 0.73 +0.0 29,734 - yafL MCAODC_00275 0.73 +0.5 29,734 - yafL MCAODC_00275 0.73 +0.0 29,734 - yafL MCAODC_00275 0.73 +0.5 29,734 - yafL MCAODC_00275 0.73 +1.1 29,772 - yafL MCAODC_00275 0.78 +0.3 29,812 - yafL MCAODC_00275 0.83 -0.4 29,812 - yafL MCAODC_00275 0.83 -0.2 29,824 + yafL MCAODC_00275 0.85 -0.1 29,824 + yafL MCAODC_00275 0.85 -0.1 29,824 + yafL MCAODC_00275 0.85 +0.4 29,824 + yafL MCAODC_00275 0.85 +0.0 29,824 + yafL MCAODC_00275 0.85 -0.4 29,825 - yafL MCAODC_00275 0.85 +0.6 29,825 - yafL MCAODC_00275 0.85 +1.0 29,876 + -1.2 29,888 + -0.4 29,889 - -0.1 29,889 - +0.2 29,981 + +1.5 29,981 + -0.1 30,013 - +0.8 30,057 + -1.3 30,058 - +1.8 30,058 - +0.3 30,058 - -0.9 30,100 + -0.0 30,101 - +0.6 30,120 + -0.9 30,121 - -0.3 30,121 - -1.3 30,135 + +0.0 30,191 + dinJ MCAODC_00280 0.25 -1.5 30,233 + dinJ MCAODC_00280 0.41 -0.3 30,279 - dinJ MCAODC_00280 0.58 -0.6 30,288 + dinJ MCAODC_00280 0.62 -0.5 30,289 - dinJ MCAODC_00280 0.62 -2.5 30,297 - dinJ MCAODC_00280 0.65 -1.6 30,297 - dinJ MCAODC_00280 0.65 +0.5 30,342 + dinJ MCAODC_00280 0.82 -0.2 30,365 + +0.6 30,373 - +1.2 30,385 + +0.5 30,385 + +0.2 30,389 + +1.1 30,389 + +2.5 30,501 + +1.2 30,504 + +0.9 30,526 + -0.1 30,527 - +1.0 30,527 - +0.6 30,527 - -0.0 30,623 + +0.2 30,624 - -0.3 30,714 + -0.4 30,715 - +1.4 30,732 - -0.2 30,757 - +0.9 30,805 - -1.0 30,814 + -0.2 30,815 - -4.5 30,815 - -0.2 30,815 - -1.6 30,821 + +0.1 30,822 - +3.8 30,896 + dpaA MCAODC_00285 0.10 -0.0 30,924 + dpaA MCAODC_00285 0.14 -1.1 30,924 + dpaA MCAODC_00285 0.14 +0.0 30,924 + dpaA MCAODC_00285 0.14 -0.2 30,925 - dpaA MCAODC_00285 0.14 -0.1 30,925 - dpaA MCAODC_00285 0.14 +0.4 30,925 - dpaA MCAODC_00285 0.14 +0.8 30,926 + dpaA MCAODC_00285 0.14 +0.3 30,926 + dpaA MCAODC_00285 0.14 -0.5 30,926 + dpaA MCAODC_00285 0.14 -0.4 30,927 - dpaA MCAODC_00285 0.14 -0.4 30,954 + dpaA MCAODC_00285 0.18 -0.6 30,954 + dpaA MCAODC_00285 0.18 -0.3 30,955 - dpaA MCAODC_00285 0.18 +0.5 30,980 + dpaA MCAODC_00285 0.21 +0.8 30,980 + dpaA MCAODC_00285 0.21 +1.0 30,980 + dpaA MCAODC_00285 0.21 +0.1 30,993 + dpaA MCAODC_00285 0.23 -0.6 30,993 + dpaA MCAODC_00285 0.23 -0.3 30,994 - dpaA MCAODC_00285 0.23 +0.9 30,994 - dpaA MCAODC_00285 0.23 -0.7 31,033 - dpaA MCAODC_00285 0.28 -1.2 31,034 + dpaA MCAODC_00285 0.29 +0.3 31,048 - dpaA MCAODC_00285 0.30 +0.8 31,108 - dpaA MCAODC_00285 0.39 +0.6 31,110 - dpaA MCAODC_00285 0.39 +0.2 31,122 - dpaA MCAODC_00285 0.40 -2.4 31,147 - dpaA MCAODC_00285 0.44 +2.4 31,149 + dpaA MCAODC_00285 0.44 -0.3 31,149 + dpaA MCAODC_00285 0.44 -0.4 31,150 - dpaA MCAODC_00285 0.44 +0.4 31,163 + dpaA MCAODC_00285 0.46 +1.1 31,164 - dpaA MCAODC_00285 0.46 +2.0 31,164 - dpaA MCAODC_00285 0.46 -1.6 31,164 - dpaA MCAODC_00285 0.46 -0.0 31,164 - dpaA MCAODC_00285 0.46 -1.1 31,182 + dpaA MCAODC_00285 0.49 +1.1 31,182 + dpaA MCAODC_00285 0.49 -1.0 31,182 + dpaA MCAODC_00285 0.49 -1.0 31,200 + dpaA MCAODC_00285 0.51 -1.5 31,309 + dpaA MCAODC_00285 0.66 -1.8 31,309 + dpaA MCAODC_00285 0.66 -2.4 31,342 - dpaA MCAODC_00285 0.70 -0.3 31,379 + dpaA MCAODC_00285 0.75 +0.6 31,379 + dpaA MCAODC_00285 0.75 -0.1 31,383 + dpaA MCAODC_00285 0.76 -1.5 31,383 + dpaA MCAODC_00285 0.76 +0.3
Or see this region's nucleotide sequence