Experiment: TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20805 and MCAODC_20810 are separated by 56 nucleotides MCAODC_20810 and MCAODC_20815 are separated by 12 nucleotides MCAODC_20815 and spoIVCA are separated by 59 nucleotides spoIVCA and MCAODC_20825 are separated by 30 nucleotides
MCAODC_20805: MCAODC_20805 - Phage tail assembly chaperone proteins, E, or 41 or 14, at 975,176 to 975,451
_20805
MCAODC_20810: MCAODC_20810 - Tail tube protein, at 975,508 to 976,026
_20810
MCAODC_20815: MCAODC_20815 - phage tail protein, at 976,039 to 977,229
_20815
MCAODC_20820: spoIVCA - DNA-invertase, at 977,289 to 977,882
spoIVCA
MCAODC_20825: MCAODC_20825 - phage tail protein, at 977,913 to 978,443
_20825
Position (kb) 976
977
978 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 975.097 kb on + strand at 975.097 kb on + strand at 975.098 kb on - strand at 975.123 kb on + strand at 975.302 kb on - strand, within MCAODC_20805 at 975.302 kb on - strand, within MCAODC_20805 at 975.624 kb on - strand, within MCAODC_20810 at 975.928 kb on - strand, within MCAODC_20810 at 975.928 kb on - strand, within MCAODC_20810 at 975.971 kb on + strand, within MCAODC_20810 at 975.971 kb on + strand, within MCAODC_20810 at 976.041 kb on - strand at 976.076 kb on + strand at 976.080 kb on + strand at 976.081 kb on - strand at 976.081 kb on - strand at 976.090 kb on - strand at 976.131 kb on + strand at 976.131 kb on + strand at 976.131 kb on + strand at 976.132 kb on - strand at 976.132 kb on - strand at 976.132 kb on - strand at 976.132 kb on - strand at 976.133 kb on + strand at 976.148 kb on + strand at 976.148 kb on + strand at 976.220 kb on + strand, within MCAODC_20815 at 976.220 kb on + strand, within MCAODC_20815 at 976.361 kb on + strand, within MCAODC_20815 at 976.440 kb on + strand, within MCAODC_20815 at 976.459 kb on - strand, within MCAODC_20815 at 976.502 kb on - strand, within MCAODC_20815 at 976.728 kb on + strand, within MCAODC_20815 at 976.728 kb on + strand, within MCAODC_20815 at 976.728 kb on + strand, within MCAODC_20815 at 976.746 kb on + strand, within MCAODC_20815 at 976.886 kb on + strand, within MCAODC_20815 at 976.887 kb on - strand, within MCAODC_20815 at 976.887 kb on - strand, within MCAODC_20815 at 976.917 kb on + strand, within MCAODC_20815 at 977.046 kb on + strand, within MCAODC_20815 at 977.235 kb on + strand at 977.248 kb on - strand at 977.261 kb on + strand at 977.604 kb on - strand, within spoIVCA at 977.604 kb on - strand, within spoIVCA at 977.679 kb on - strand, within spoIVCA at 977.691 kb on - strand, within spoIVCA at 977.728 kb on - strand, within spoIVCA at 977.825 kb on + strand at 977.826 kb on - strand at 977.866 kb on - strand at 977.866 kb on - strand at 977.866 kb on - strand at 977.869 kb on + strand at 977.869 kb on + strand at 977.870 kb on - strand at 977.877 kb on - strand at 978.095 kb on + strand, within MCAODC_20825 at 978.122 kb on + strand, within MCAODC_20825
Per-strain Table
Position Strand Gene LocusTag Fraction TP6 remove 975,097 + -1.4 975,097 + -0.7 975,098 - +1.6 975,123 + +0.9 975,302 - MCAODC_20805 0.46 -2.0 975,302 - MCAODC_20805 0.46 +0.4 975,624 - MCAODC_20810 0.22 -0.2 975,928 - MCAODC_20810 0.81 +1.1 975,928 - MCAODC_20810 0.81 -0.1 975,971 + MCAODC_20810 0.89 -0.7 975,971 + MCAODC_20810 0.89 +0.5 976,041 - +0.0 976,076 + -0.4 976,080 + -1.3 976,081 - -2.7 976,081 - -0.6 976,090 - -0.1 976,131 + +0.1 976,131 + +1.4 976,131 + +0.6 976,132 - +0.7 976,132 - -0.8 976,132 - +0.1 976,132 - +0.4 976,133 + -0.6 976,148 + +4.4 976,148 + +1.5 976,220 + MCAODC_20815 0.15 +2.6 976,220 + MCAODC_20815 0.15 -0.3 976,361 + MCAODC_20815 0.27 +1.8 976,440 + MCAODC_20815 0.34 -0.1 976,459 - MCAODC_20815 0.35 +2.1 976,502 - MCAODC_20815 0.39 -0.3 976,728 + MCAODC_20815 0.58 +0.7 976,728 + MCAODC_20815 0.58 +0.1 976,728 + MCAODC_20815 0.58 -1.3 976,746 + MCAODC_20815 0.59 -0.8 976,886 + MCAODC_20815 0.71 +1.2 976,887 - MCAODC_20815 0.71 +0.2 976,887 - MCAODC_20815 0.71 -2.5 976,917 + MCAODC_20815 0.74 +0.1 977,046 + MCAODC_20815 0.85 -0.6 977,235 + -0.3 977,248 - -0.5 977,261 + +0.8 977,604 - spoIVCA MCAODC_20820 0.53 +2.4 977,604 - spoIVCA MCAODC_20820 0.53 -2.2 977,679 - spoIVCA MCAODC_20820 0.66 -1.3 977,691 - spoIVCA MCAODC_20820 0.68 +0.2 977,728 - spoIVCA MCAODC_20820 0.74 -0.3 977,825 + +0.1 977,826 - +0.1 977,866 - -0.9 977,866 - -1.1 977,866 - +0.8 977,869 + +0.8 977,869 + -1.4 977,870 - +0.3 977,877 - +1.5 978,095 + MCAODC_20825 0.34 -1.1 978,122 + MCAODC_20825 0.39 +1.1
Or see this region's nucleotide sequence