Strain Fitness in Escherichia coli ECRC101 around MCAODC_16640

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdosP and dosC are separated by 24 nucleotidesdosC and digH are separated by 376 nucleotides MCAODC_16635: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 223,298 to 224,539 dosP MCAODC_16640: dosC - diguanylate cyclase DosC, at 224,564 to 225,946 dosC MCAODC_16645: digH - Glycosyl hydrolase DigH, at 226,323 to 227,642 digH Position (kb) 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 223.634 kb on + strand, within dosPat 223.859 kb on - strand, within dosPat 224.365 kb on + strand, within dosPat 224.365 kb on + strand, within dosPat 224.476 kb on + strandat 224.476 kb on + strandat 225.264 kb on + strand, within dosCat 225.264 kb on + strand, within dosCat 225.538 kb on - strand, within dosCat 225.683 kb on + strand, within dosCat 225.837 kb on + strandat 226.049 kb on - strandat 226.109 kb on + strandat 226.111 kb on + strandat 226.111 kb on + strandat 226.176 kb on + strandat 226.311 kb on - strandat 226.348 kb on + strandat 226.384 kb on + strandat 226.534 kb on + strand, within digHat 226.592 kb on - strand, within digHat 226.796 kb on + strand, within digHat 226.797 kb on - strand, within digHat 226.833 kb on - strand, within digHat 226.881 kb on - strand, within digHat 226.933 kb on + strand, within digH

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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223,634 + dosP MCAODC_16635 0.27 +0.7
223,859 - dosP MCAODC_16635 0.45 +2.0
224,365 + dosP MCAODC_16635 0.86 -0.1
224,365 + dosP MCAODC_16635 0.86 -0.7
224,476 + -0.7
224,476 + -0.6
225,264 + dosC MCAODC_16640 0.51 -3.1
225,264 + dosC MCAODC_16640 0.51 -3.2
225,538 - dosC MCAODC_16640 0.70 -0.5
225,683 + dosC MCAODC_16640 0.81 +0.0
225,837 + +0.4
226,049 - -1.5
226,109 + -0.4
226,111 + +0.2
226,111 + +0.9
226,176 + +1.4
226,311 - +0.8
226,348 + -1.2
226,384 + +0.3
226,534 + digH MCAODC_16645 0.16 -0.6
226,592 - digH MCAODC_16645 0.20 -0.9
226,796 + digH MCAODC_16645 0.36 -1.0
226,797 - digH MCAODC_16645 0.36 +0.9
226,833 - digH MCAODC_16645 0.39 -2.8
226,881 - digH MCAODC_16645 0.42 -0.5
226,933 + digH MCAODC_16645 0.46 -0.5

Or see this region's nucleotide sequence