Strain Fitness in Escherichia coli ECRC101 around MCAODC_26105

Experiment: WM_TP6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_26100 and MCAODC_26105 overlap by 4 nucleotidesMCAODC_26105 and gltP are separated by 160 nucleotides MCAODC_26100: MCAODC_26100 - 3-methylaspartate ammonia-lyase, at 1,932,181 to 1,933,551 _26100 MCAODC_26105: MCAODC_26105 - DUF4387 domain-containing protein, at 1,933,548 to 1,933,865 _26105 MCAODC_26110: gltP - dicarboxylate/amino acid:cation symporter, at 1,934,026 to 1,935,306 gltP Position (kb) 1933 1934Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1932.630 kb on + strand, within MCAODC_26100at 1932.631 kb on - strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.634 kb on + strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.635 kb on - strand, within MCAODC_26100at 1932.636 kb on + strand, within MCAODC_26100at 1932.898 kb on - strand, within MCAODC_26100at 1932.934 kb on + strand, within MCAODC_26100at 1932.934 kb on + strand, within MCAODC_26100at 1932.953 kb on - strand, within MCAODC_26100at 1933.003 kb on - strand, within MCAODC_26100at 1933.003 kb on - strand, within MCAODC_26100at 1933.041 kb on + strand, within MCAODC_26100at 1933.041 kb on + strand, within MCAODC_26100at 1933.041 kb on + strand, within MCAODC_26100at 1933.041 kb on + strand, within MCAODC_26100at 1933.060 kb on + strand, within MCAODC_26100at 1933.153 kb on - strand, within MCAODC_26100at 1933.310 kb on + strand, within MCAODC_26100at 1933.363 kb on - strand, within MCAODC_26100at 1933.375 kb on + strand, within MCAODC_26100at 1933.376 kb on - strand, within MCAODC_26100at 1933.407 kb on + strand, within MCAODC_26100at 1933.407 kb on + strand, within MCAODC_26100at 1933.408 kb on - strand, within MCAODC_26100at 1933.408 kb on - strand, within MCAODC_26100at 1933.456 kb on + strandat 1933.469 kb on + strandat 1933.470 kb on - strandat 1933.471 kb on + strandat 1933.472 kb on - strandat 1933.472 kb on - strandat 1933.472 kb on - strandat 1933.472 kb on - strandat 1933.751 kb on + strand, within MCAODC_26105at 1934.220 kb on - strand, within gltPat 1934.224 kb on - strand, within gltPat 1934.224 kb on - strand, within gltPat 1934.358 kb on + strand, within gltPat 1934.418 kb on - strand, within gltPat 1934.565 kb on - strand, within gltPat 1934.588 kb on + strand, within gltPat 1934.589 kb on - strand, within gltPat 1934.589 kb on - strand, within gltPat 1934.603 kb on - strand, within gltPat 1934.641 kb on - strand, within gltPat 1934.676 kb on + strand, within gltPat 1934.677 kb on - strand, within gltPat 1934.698 kb on - strand, within gltPat 1934.723 kb on + strand, within gltPat 1934.727 kb on - strand, within gltPat 1934.761 kb on + strand, within gltPat 1934.823 kb on + strand, within gltPat 1934.824 kb on - strand, within gltP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
remove
1,932,630 + MCAODC_26100 0.33 -1.5
1,932,631 - MCAODC_26100 0.33 -0.0
1,932,634 + MCAODC_26100 0.33 +1.3
1,932,634 + MCAODC_26100 0.33 -0.4
1,932,634 + MCAODC_26100 0.33 +0.3
1,932,634 + MCAODC_26100 0.33 -1.1
1,932,634 + MCAODC_26100 0.33 +0.4
1,932,634 + MCAODC_26100 0.33 -1.3
1,932,634 + MCAODC_26100 0.33 +0.5
1,932,634 + MCAODC_26100 0.33 +0.9
1,932,634 + MCAODC_26100 0.33 +0.6
1,932,635 - MCAODC_26100 0.33 -0.5
1,932,635 - MCAODC_26100 0.33 +1.3
1,932,635 - MCAODC_26100 0.33 -0.3
1,932,635 - MCAODC_26100 0.33 +0.1
1,932,635 - MCAODC_26100 0.33 -0.1
1,932,635 - MCAODC_26100 0.33 -0.0
1,932,635 - MCAODC_26100 0.33 +0.2
1,932,635 - MCAODC_26100 0.33 +0.0
1,932,635 - MCAODC_26100 0.33 -2.2
1,932,635 - MCAODC_26100 0.33 +0.0
1,932,635 - MCAODC_26100 0.33 +0.4
1,932,636 + MCAODC_26100 0.33 -0.1
1,932,898 - MCAODC_26100 0.52 -0.7
1,932,934 + MCAODC_26100 0.55 +0.3
1,932,934 + MCAODC_26100 0.55 -1.6
1,932,953 - MCAODC_26100 0.56 -1.4
1,933,003 - MCAODC_26100 0.60 -0.9
1,933,003 - MCAODC_26100 0.60 +1.0
1,933,041 + MCAODC_26100 0.63 -0.2
1,933,041 + MCAODC_26100 0.63 +0.3
1,933,041 + MCAODC_26100 0.63 +0.2
1,933,041 + MCAODC_26100 0.63 +1.2
1,933,060 + MCAODC_26100 0.64 -0.1
1,933,153 - MCAODC_26100 0.71 -1.1
1,933,310 + MCAODC_26100 0.82 -3.0
1,933,363 - MCAODC_26100 0.86 +0.0
1,933,375 + MCAODC_26100 0.87 +0.0
1,933,376 - MCAODC_26100 0.87 +2.0
1,933,407 + MCAODC_26100 0.89 -0.0
1,933,407 + MCAODC_26100 0.89 +0.3
1,933,408 - MCAODC_26100 0.89 +0.2
1,933,408 - MCAODC_26100 0.89 +0.7
1,933,456 + +0.4
1,933,469 + +0.6
1,933,470 - +0.3
1,933,471 + -0.5
1,933,472 - -1.1
1,933,472 - -1.7
1,933,472 - -1.8
1,933,472 - +1.4
1,933,751 + MCAODC_26105 0.64 -1.0
1,934,220 - gltP MCAODC_26110 0.15 +0.6
1,934,224 - gltP MCAODC_26110 0.15 -0.0
1,934,224 - gltP MCAODC_26110 0.15 +0.5
1,934,358 + gltP MCAODC_26110 0.26 -1.3
1,934,418 - gltP MCAODC_26110 0.31 -0.7
1,934,565 - gltP MCAODC_26110 0.42 +1.3
1,934,588 + gltP MCAODC_26110 0.44 -0.1
1,934,589 - gltP MCAODC_26110 0.44 +0.4
1,934,589 - gltP MCAODC_26110 0.44 +0.0
1,934,603 - gltP MCAODC_26110 0.45 +0.4
1,934,641 - gltP MCAODC_26110 0.48 +1.0
1,934,676 + gltP MCAODC_26110 0.51 -0.8
1,934,677 - gltP MCAODC_26110 0.51 -0.5
1,934,698 - gltP MCAODC_26110 0.52 +0.7
1,934,723 + gltP MCAODC_26110 0.54 +1.1
1,934,727 - gltP MCAODC_26110 0.55 +0.1
1,934,761 + gltP MCAODC_26110 0.57 +2.0
1,934,823 + gltP MCAODC_26110 0.62 -0.9
1,934,824 - gltP MCAODC_26110 0.62 -0.8

Or see this region's nucleotide sequence