Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_26100 and MCAODC_26105 overlap by 4 nucleotides MCAODC_26105 and gltP are separated by 160 nucleotides
MCAODC_26100: MCAODC_26100 - 3-methylaspartate ammonia-lyase, at 1,932,181 to 1,933,551
_26100
MCAODC_26105: MCAODC_26105 - DUF4387 domain-containing protein, at 1,933,548 to 1,933,865
_26105
MCAODC_26110: gltP - dicarboxylate/amino acid:cation symporter, at 1,934,026 to 1,935,306
gltP
Position (kb)
1933
1934 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1932.630 kb on + strand, within MCAODC_26100 at 1932.631 kb on - strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.634 kb on + strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.635 kb on - strand, within MCAODC_26100 at 1932.636 kb on + strand, within MCAODC_26100 at 1932.898 kb on - strand, within MCAODC_26100 at 1932.934 kb on + strand, within MCAODC_26100 at 1932.934 kb on + strand, within MCAODC_26100 at 1932.953 kb on - strand, within MCAODC_26100 at 1933.003 kb on - strand, within MCAODC_26100 at 1933.003 kb on - strand, within MCAODC_26100 at 1933.041 kb on + strand, within MCAODC_26100 at 1933.041 kb on + strand, within MCAODC_26100 at 1933.041 kb on + strand, within MCAODC_26100 at 1933.041 kb on + strand, within MCAODC_26100 at 1933.060 kb on + strand, within MCAODC_26100 at 1933.153 kb on - strand, within MCAODC_26100 at 1933.310 kb on + strand, within MCAODC_26100 at 1933.363 kb on - strand, within MCAODC_26100 at 1933.375 kb on + strand, within MCAODC_26100 at 1933.376 kb on - strand, within MCAODC_26100 at 1933.407 kb on + strand, within MCAODC_26100 at 1933.407 kb on + strand, within MCAODC_26100 at 1933.408 kb on - strand, within MCAODC_26100 at 1933.408 kb on - strand, within MCAODC_26100 at 1933.456 kb on + strand at 1933.469 kb on + strand at 1933.470 kb on - strand at 1933.471 kb on + strand at 1933.472 kb on - strand at 1933.472 kb on - strand at 1933.472 kb on - strand at 1933.472 kb on - strand at 1933.751 kb on + strand, within MCAODC_26105 at 1934.220 kb on - strand, within gltP at 1934.224 kb on - strand, within gltP at 1934.224 kb on - strand, within gltP at 1934.358 kb on + strand, within gltP at 1934.418 kb on - strand, within gltP at 1934.565 kb on - strand, within gltP at 1934.588 kb on + strand, within gltP at 1934.589 kb on - strand, within gltP at 1934.589 kb on - strand, within gltP at 1934.603 kb on - strand, within gltP at 1934.641 kb on - strand, within gltP at 1934.676 kb on + strand, within gltP at 1934.677 kb on - strand, within gltP at 1934.698 kb on - strand, within gltP at 1934.723 kb on + strand, within gltP at 1934.727 kb on - strand, within gltP at 1934.761 kb on + strand, within gltP at 1934.823 kb on + strand, within gltP at 1934.824 kb on - strand, within gltP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 1,932,630 + MCAODC_26100 0.33 -1.5 1,932,631 - MCAODC_26100 0.33 -0.0 1,932,634 + MCAODC_26100 0.33 +1.3 1,932,634 + MCAODC_26100 0.33 -0.4 1,932,634 + MCAODC_26100 0.33 +0.3 1,932,634 + MCAODC_26100 0.33 -1.1 1,932,634 + MCAODC_26100 0.33 +0.4 1,932,634 + MCAODC_26100 0.33 -1.3 1,932,634 + MCAODC_26100 0.33 +0.5 1,932,634 + MCAODC_26100 0.33 +0.9 1,932,634 + MCAODC_26100 0.33 +0.6 1,932,635 - MCAODC_26100 0.33 -0.5 1,932,635 - MCAODC_26100 0.33 +1.3 1,932,635 - MCAODC_26100 0.33 -0.3 1,932,635 - MCAODC_26100 0.33 +0.1 1,932,635 - MCAODC_26100 0.33 -0.1 1,932,635 - MCAODC_26100 0.33 -0.0 1,932,635 - MCAODC_26100 0.33 +0.2 1,932,635 - MCAODC_26100 0.33 +0.0 1,932,635 - MCAODC_26100 0.33 -2.2 1,932,635 - MCAODC_26100 0.33 +0.0 1,932,635 - MCAODC_26100 0.33 +0.4 1,932,636 + MCAODC_26100 0.33 -0.1 1,932,898 - MCAODC_26100 0.52 -0.7 1,932,934 + MCAODC_26100 0.55 +0.3 1,932,934 + MCAODC_26100 0.55 -1.6 1,932,953 - MCAODC_26100 0.56 -1.4 1,933,003 - MCAODC_26100 0.60 -0.9 1,933,003 - MCAODC_26100 0.60 +1.0 1,933,041 + MCAODC_26100 0.63 -0.2 1,933,041 + MCAODC_26100 0.63 +0.3 1,933,041 + MCAODC_26100 0.63 +0.2 1,933,041 + MCAODC_26100 0.63 +1.2 1,933,060 + MCAODC_26100 0.64 -0.1 1,933,153 - MCAODC_26100 0.71 -1.1 1,933,310 + MCAODC_26100 0.82 -3.0 1,933,363 - MCAODC_26100 0.86 +0.0 1,933,375 + MCAODC_26100 0.87 +0.0 1,933,376 - MCAODC_26100 0.87 +2.0 1,933,407 + MCAODC_26100 0.89 -0.0 1,933,407 + MCAODC_26100 0.89 +0.3 1,933,408 - MCAODC_26100 0.89 +0.2 1,933,408 - MCAODC_26100 0.89 +0.7 1,933,456 + +0.4 1,933,469 + +0.6 1,933,470 - +0.3 1,933,471 + -0.5 1,933,472 - -1.1 1,933,472 - -1.7 1,933,472 - -1.8 1,933,472 - +1.4 1,933,751 + MCAODC_26105 0.64 -1.0 1,934,220 - gltP MCAODC_26110 0.15 +0.6 1,934,224 - gltP MCAODC_26110 0.15 -0.0 1,934,224 - gltP MCAODC_26110 0.15 +0.5 1,934,358 + gltP MCAODC_26110 0.26 -1.3 1,934,418 - gltP MCAODC_26110 0.31 -0.7 1,934,565 - gltP MCAODC_26110 0.42 +1.3 1,934,588 + gltP MCAODC_26110 0.44 -0.1 1,934,589 - gltP MCAODC_26110 0.44 +0.4 1,934,589 - gltP MCAODC_26110 0.44 +0.0 1,934,603 - gltP MCAODC_26110 0.45 +0.4 1,934,641 - gltP MCAODC_26110 0.48 +1.0 1,934,676 + gltP MCAODC_26110 0.51 -0.8 1,934,677 - gltP MCAODC_26110 0.51 -0.5 1,934,698 - gltP MCAODC_26110 0.52 +0.7 1,934,723 + gltP MCAODC_26110 0.54 +1.1 1,934,727 - gltP MCAODC_26110 0.55 +0.1 1,934,761 + gltP MCAODC_26110 0.57 +2.0 1,934,823 + gltP MCAODC_26110 0.62 -0.9 1,934,824 - gltP MCAODC_26110 0.62 -0.8
Or see this region's nucleotide sequence