Strain Fitness in Escherichia coli ECRC101 around MCAODC_25690

Experiment: WM_TP6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_25680 and MCAODC_25685 are separated by 5 nucleotidesMCAODC_25685 and MCAODC_25690 are separated by 9 nucleotidesMCAODC_25690 and MCAODC_25695 overlap by 1 nucleotides MCAODC_25680: MCAODC_25680 - phage tail protein, at 1,862,595 to 1,863,338 _25680 MCAODC_25685: MCAODC_25685 - phage minor tail protein L, at 1,863,344 to 1,864,042 _25685 MCAODC_25690: MCAODC_25690 - phage tail protein, at 1,864,052 to 1,864,381 _25690 MCAODC_25695: MCAODC_25695 - phage tail tape measure protein, at 1,864,381 to 1,867,446 _25695 Position (kb) 1864 1865Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1864.053 kb on + strandat 1864.053 kb on + strandat 1864.054 kb on - strandat 1864.120 kb on + strand, within MCAODC_25690at 1864.121 kb on - strand, within MCAODC_25690at 1864.153 kb on - strand, within MCAODC_25690at 1864.153 kb on - strand, within MCAODC_25690at 1864.208 kb on + strand, within MCAODC_25690at 1864.209 kb on - strand, within MCAODC_25690at 1864.209 kb on - strand, within MCAODC_25690at 1864.228 kb on + strand, within MCAODC_25690at 1864.229 kb on - strand, within MCAODC_25690at 1864.239 kb on - strand, within MCAODC_25690at 1864.252 kb on - strand, within MCAODC_25690at 1864.268 kb on - strand, within MCAODC_25690at 1864.431 kb on + strandat 1864.489 kb on + strandat 1864.489 kb on + strandat 1864.530 kb on - strandat 1864.552 kb on - strandat 1864.588 kb on - strandat 1864.700 kb on + strand, within MCAODC_25695at 1864.701 kb on - strand, within MCAODC_25695at 1864.724 kb on + strand, within MCAODC_25695at 1864.724 kb on + strand, within MCAODC_25695at 1864.725 kb on - strand, within MCAODC_25695at 1864.725 kb on - strand, within MCAODC_25695at 1864.793 kb on - strand, within MCAODC_25695at 1864.834 kb on - strand, within MCAODC_25695at 1864.959 kb on + strand, within MCAODC_25695at 1864.960 kb on - strand, within MCAODC_25695at 1865.014 kb on - strand, within MCAODC_25695at 1865.020 kb on + strand, within MCAODC_25695at 1865.105 kb on + strand, within MCAODC_25695at 1865.105 kb on + strand, within MCAODC_25695at 1865.118 kb on + strand, within MCAODC_25695at 1865.119 kb on - strand, within MCAODC_25695at 1865.119 kb on - strand, within MCAODC_25695at 1865.119 kb on - strand, within MCAODC_25695at 1865.119 kb on - strand, within MCAODC_25695at 1865.120 kb on + strand, within MCAODC_25695at 1865.120 kb on + strand, within MCAODC_25695at 1865.120 kb on + strand, within MCAODC_25695at 1865.120 kb on + strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.121 kb on - strand, within MCAODC_25695at 1865.227 kb on - strand, within MCAODC_25695

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
remove
1,864,053 + -0.5
1,864,053 + +1.1
1,864,054 - +0.1
1,864,120 + MCAODC_25690 0.21 +2.7
1,864,121 - MCAODC_25690 0.21 -1.2
1,864,153 - MCAODC_25690 0.31 -1.6
1,864,153 - MCAODC_25690 0.31 -1.8
1,864,208 + MCAODC_25690 0.47 -1.7
1,864,209 - MCAODC_25690 0.48 -1.8
1,864,209 - MCAODC_25690 0.48 -0.2
1,864,228 + MCAODC_25690 0.53 +1.2
1,864,229 - MCAODC_25690 0.54 -2.4
1,864,239 - MCAODC_25690 0.57 -0.6
1,864,252 - MCAODC_25690 0.61 -1.4
1,864,268 - MCAODC_25690 0.65 -1.6
1,864,431 + +0.9
1,864,489 + +0.1
1,864,489 + +0.5
1,864,530 - -0.6
1,864,552 - +0.5
1,864,588 - +1.6
1,864,700 + MCAODC_25695 0.10 -0.3
1,864,701 - MCAODC_25695 0.10 -0.8
1,864,724 + MCAODC_25695 0.11 +1.3
1,864,724 + MCAODC_25695 0.11 -1.0
1,864,725 - MCAODC_25695 0.11 -1.0
1,864,725 - MCAODC_25695 0.11 -0.2
1,864,793 - MCAODC_25695 0.13 +0.3
1,864,834 - MCAODC_25695 0.15 +1.0
1,864,959 + MCAODC_25695 0.19 -0.5
1,864,960 - MCAODC_25695 0.19 -0.9
1,865,014 - MCAODC_25695 0.21 -0.4
1,865,020 + MCAODC_25695 0.21 +0.9
1,865,105 + MCAODC_25695 0.24 -0.0
1,865,105 + MCAODC_25695 0.24 +0.7
1,865,118 + MCAODC_25695 0.24 +0.3
1,865,119 - MCAODC_25695 0.24 +3.0
1,865,119 - MCAODC_25695 0.24 -1.2
1,865,119 - MCAODC_25695 0.24 -0.7
1,865,119 - MCAODC_25695 0.24 -0.7
1,865,120 + MCAODC_25695 0.24 -1.4
1,865,120 + MCAODC_25695 0.24 -1.4
1,865,120 + MCAODC_25695 0.24 +0.0
1,865,120 + MCAODC_25695 0.24 +0.1
1,865,121 - MCAODC_25695 0.24 -0.3
1,865,121 - MCAODC_25695 0.24 +0.7
1,865,121 - MCAODC_25695 0.24 -0.2
1,865,121 - MCAODC_25695 0.24 +0.9
1,865,121 - MCAODC_25695 0.24 +0.4
1,865,121 - MCAODC_25695 0.24 -0.5
1,865,121 - MCAODC_25695 0.24 +0.3
1,865,121 - MCAODC_25695 0.24 +0.3
1,865,121 - MCAODC_25695 0.24 +0.5
1,865,121 - MCAODC_25695 0.24 +0.3
1,865,121 - MCAODC_25695 0.24 -0.4
1,865,121 - MCAODC_25695 0.24 +0.3
1,865,121 - MCAODC_25695 0.24 -0.4
1,865,121 - MCAODC_25695 0.24 +0.4
1,865,227 - MCAODC_25695 0.28 +0.7

Or see this region's nucleotide sequence