Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt marR and MCAODC_19440 overlap by 4 nucleotides MCAODC_19440 and MCAODC_19455 are separated by 322 nucleotides MCAODC_19455 and MCAODC_19460 are separated by 72 nucleotides MCAODC_19460 and MCAODC_19465 are separated by 6 nucleotides
MCAODC_19435: marR - MarR family transcriptional regulator, at 727,109 to 727,375
marR
MCAODC_19440: MCAODC_19440 - hypothetical protein, at 727,372 to 727,671
_19440
MCAODC_19455: MCAODC_19455 - derepression protein, at 727,994 to 728,224
_19455
MCAODC_19460: MCAODC_19460 - Phage protein, at 728,297 to 728,662
_19460
MCAODC_19465: MCAODC_19465 - replication protein, at 728,669 to 731,491
_19465
Position (kb) 728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 727.299 kb on + strand, within marR at 727.300 kb on - strand, within marR at 727.322 kb on - strand, within marR at 727.322 kb on - strand, within marR at 727.334 kb on - strand, within marR at 727.353 kb on + strand at 727.397 kb on + strand at 727.397 kb on + strand at 727.728 kb on + strand at 727.820 kb on + strand at 727.820 kb on + strand at 727.821 kb on - strand at 727.964 kb on - strand at 728.104 kb on + strand, within MCAODC_19455 at 728.104 kb on + strand, within MCAODC_19455 at 728.222 kb on + strand at 728.324 kb on + strand at 728.441 kb on + strand, within MCAODC_19460 at 728.516 kb on + strand, within MCAODC_19460 at 728.668 kb on + strand at 728.681 kb on + strand at 728.852 kb on - strand at 728.854 kb on + strand at 728.854 kb on + strand at 728.973 kb on - strand, within MCAODC_19465 at 729.094 kb on - strand, within MCAODC_19465 at 729.310 kb on - strand, within MCAODC_19465 at 729.374 kb on + strand, within MCAODC_19465 at 729.374 kb on + strand, within MCAODC_19465 at 729.374 kb on + strand, within MCAODC_19465 at 729.375 kb on - strand, within MCAODC_19465 at 729.375 kb on - strand, within MCAODC_19465 at 729.375 kb on - strand, within MCAODC_19465 at 729.490 kb on - strand, within MCAODC_19465 at 729.555 kb on - strand, within MCAODC_19465 at 729.574 kb on - strand, within MCAODC_19465
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 727,299 + marR MCAODC_19435 0.71 -2.4 727,300 - marR MCAODC_19435 0.72 -0.3 727,322 - marR MCAODC_19435 0.80 +0.1 727,322 - marR MCAODC_19435 0.80 +0.7 727,334 - marR MCAODC_19435 0.84 -2.5 727,353 + -0.0 727,397 + -2.9 727,397 + -0.8 727,728 + -0.2 727,820 + +0.5 727,820 + -0.3 727,821 - +0.4 727,964 - -0.2 728,104 + MCAODC_19455 0.48 -1.1 728,104 + MCAODC_19455 0.48 +1.3 728,222 + -2.0 728,324 + +1.4 728,441 + MCAODC_19460 0.39 -0.9 728,516 + MCAODC_19460 0.60 -0.9 728,668 + +0.3 728,681 + -0.3 728,852 - +0.8 728,854 + -0.8 728,854 + -1.2 728,973 - MCAODC_19465 0.11 -1.1 729,094 - MCAODC_19465 0.15 +0.5 729,310 - MCAODC_19465 0.23 -0.0 729,374 + MCAODC_19465 0.25 +0.9 729,374 + MCAODC_19465 0.25 -0.6 729,374 + MCAODC_19465 0.25 -0.1 729,375 - MCAODC_19465 0.25 +0.6 729,375 - MCAODC_19465 0.25 +2.0 729,375 - MCAODC_19465 0.25 +0.9 729,490 - MCAODC_19465 0.29 -0.9 729,555 - MCAODC_19465 0.31 -0.7 729,574 - MCAODC_19465 0.32 -1.2
Or see this region's nucleotide sequence