Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynjE and ynjF are separated by 8 nucleotides ynjF and nudG are separated by 86 nucleotides nudG and ynjH overlap by 35 nucleotides ynjH and gdhA are separated by 235 nucleotides
MCAODC_18550: ynjE - thiosulfate sulfurtransferase YnjE, at 568,247 to 569,554
ynjE
MCAODC_18555: ynjF - Inner membrane protein YnjF, at 569,563 to 570,183
ynjF
MCAODC_18560: nudG - CTP pyrophosphohydrolase, at 570,270 to 570,677
nudG
MCAODC_18565: ynjH - Uncharacterized protein YnjH, at 570,643 to 570,915
ynjH
MCAODC_18570: gdhA - NADP-specific glutamate dehydrogenase, at 571,151 to 572,494
gdhA
Position (kb) 570
571 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.431 kb on + strand at 569.431 kb on + strand at 569.432 kb on - strand at 569.435 kb on + strand at 569.435 kb on + strand at 569.699 kb on - strand, within ynjF at 569.736 kb on - strand, within ynjF at 569.736 kb on - strand, within ynjF at 569.777 kb on + strand, within ynjF at 569.884 kb on - strand, within ynjF at 569.884 kb on - strand, within ynjF at 570.118 kb on - strand, within ynjF at 570.198 kb on + strand at 570.199 kb on - strand at 570.201 kb on - strand at 570.201 kb on - strand at 570.231 kb on + strand at 570.465 kb on + strand, within nudG at 570.465 kb on + strand, within nudG at 570.465 kb on + strand, within nudG at 570.631 kb on + strand, within nudG at 570.632 kb on - strand, within nudG at 570.652 kb on + strand at 570.733 kb on + strand, within ynjH at 570.734 kb on - strand, within ynjH at 570.851 kb on + strand, within ynjH at 570.890 kb on - strand at 570.890 kb on - strand at 570.946 kb on - strand at 571.009 kb on + strand at 571.009 kb on + strand at 571.021 kb on + strand at 571.074 kb on + strand at 571.076 kb on + strand at 571.114 kb on - strand at 571.136 kb on - strand at 571.150 kb on + strand at 571.163 kb on + strand at 571.242 kb on + strand at 571.243 kb on - strand at 571.243 kb on - strand at 571.243 kb on - strand at 571.283 kb on + strand at 571.348 kb on - strand, within gdhA at 571.453 kb on + strand, within gdhA at 571.510 kb on + strand, within gdhA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 569,431 + +1.8 569,431 + +1.0 569,432 - -1.1 569,435 + +0.9 569,435 + -0.1 569,699 - ynjF MCAODC_18555 0.22 -0.5 569,736 - ynjF MCAODC_18555 0.28 -0.1 569,736 - ynjF MCAODC_18555 0.28 -0.2 569,777 + ynjF MCAODC_18555 0.34 +2.0 569,884 - ynjF MCAODC_18555 0.52 +1.7 569,884 - ynjF MCAODC_18555 0.52 -1.2 570,118 - ynjF MCAODC_18555 0.89 -1.0 570,198 + +1.8 570,199 - +1.3 570,201 - -2.1 570,201 - +0.5 570,231 + +0.8 570,465 + nudG MCAODC_18560 0.48 -0.7 570,465 + nudG MCAODC_18560 0.48 -2.7 570,465 + nudG MCAODC_18560 0.48 -2.3 570,631 + nudG MCAODC_18560 0.88 -0.6 570,632 - nudG MCAODC_18560 0.89 +0.3 570,652 + +0.0 570,733 + ynjH MCAODC_18565 0.33 -0.2 570,734 - ynjH MCAODC_18565 0.33 -1.1 570,851 + ynjH MCAODC_18565 0.76 -0.8 570,890 - +0.2 570,890 - -0.6 570,946 - +0.1 571,009 + -2.1 571,009 + +1.7 571,021 + +0.1 571,074 + +0.4 571,076 + -0.4 571,114 - +0.1 571,136 - +1.1 571,150 + +0.4 571,163 + +1.1 571,242 + +0.7 571,243 - +2.4 571,243 - +1.7 571,243 - +0.7 571,283 + +0.5 571,348 - gdhA MCAODC_18570 0.15 -1.4 571,453 + gdhA MCAODC_18570 0.22 -1.0 571,510 + gdhA MCAODC_18570 0.27 -1.0
Or see this region's nucleotide sequence