Strain Fitness in Escherichia coli ECRC101 around MCAODC_14780

Experiment: WM_TP6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_14770 and MCAODC_14775 are separated by 1 nucleotidesMCAODC_14775 and MCAODC_14780 overlap by 4 nucleotidesMCAODC_14780 and MCAODC_14785 are separated by 98 nucleotidesMCAODC_14785 and MCAODC_14790 overlap by 4 nucleotidesMCAODC_14790 and MCAODC_14795 overlap by 4 nucleotidesMCAODC_14795 and MCAODC_14800 overlap by 28 nucleotidesMCAODC_14800 and exoD overlap by 1 nucleotides MCAODC_14770: MCAODC_14770 - hypothetical protein, at 2,907,082 to 2,907,258 _14770 MCAODC_14775: MCAODC_14775 - Ead/Ea22-like protein, at 2,907,260 to 2,908,207 _14775 MCAODC_14780: MCAODC_14780 - conjugal transfer protein TraR, at 2,908,204 to 2,908,425 _14780 MCAODC_14785: MCAODC_14785 - Cell division protein ZapA, at 2,908,524 to 2,908,739 _14785 MCAODC_14790: MCAODC_14790 - DUF1382 domain-containing protein, at 2,908,736 to 2,908,819 _14790 MCAODC_14795: MCAODC_14795 - DUF1382 domain-containing protein, at 2,908,816 to 2,909,007 _14795 MCAODC_14800: MCAODC_14800 - cruciferin, at 2,908,980 to 2,909,162 _14800 MCAODC_14805: exoD - Putative uncharacterized protein ExoD, at 2,909,162 to 2,909,839 exoD Position (kb) 2908 2909Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2907.259 kb on - strandat 2907.341 kb on + strandat 2907.341 kb on + strandat 2907.341 kb on + strandat 2907.341 kb on + strandat 2907.341 kb on + strandat 2907.341 kb on + strandat 2907.341 kb on + strandat 2907.343 kb on + strandat 2907.343 kb on + strandat 2907.343 kb on + strandat 2907.506 kb on - strand, within MCAODC_14775at 2907.793 kb on + strand, within MCAODC_14775at 2907.793 kb on + strand, within MCAODC_14775at 2907.927 kb on + strand, within MCAODC_14775at 2907.927 kb on + strand, within MCAODC_14775at 2907.927 kb on + strand, within MCAODC_14775at 2907.927 kb on + strand, within MCAODC_14775at 2908.133 kb on - strandat 2908.133 kb on - strandat 2908.133 kb on - strandat 2908.133 kb on - strandat 2908.133 kb on - strandat 2908.301 kb on - strand, within MCAODC_14780at 2908.385 kb on - strand, within MCAODC_14780at 2908.496 kb on - strandat 2908.765 kb on + strand, within MCAODC_14790at 2908.765 kb on + strand, within MCAODC_14790at 2908.765 kb on + strand, within MCAODC_14790at 2908.956 kb on + strand, within MCAODC_14795at 2909.007 kb on + strandat 2909.007 kb on + strandat 2909.028 kb on + strand, within MCAODC_14800at 2909.142 kb on - strand, within MCAODC_14800at 2909.142 kb on - strand, within MCAODC_14800at 2909.179 kb on - strandat 2909.181 kb on - strandat 2909.181 kb on - strandat 2909.283 kb on + strand, within exoDat 2909.283 kb on + strand, within exoDat 2909.284 kb on - strand, within exoDat 2909.284 kb on - strand, within exoDat 2909.284 kb on - strand, within exoDat 2909.284 kb on - strand, within exoDat 2909.284 kb on - strand, within exoDat 2909.284 kb on - strand, within exoDat 2909.316 kb on + strand, within exoDat 2909.328 kb on + strand, within exoDat 2909.328 kb on + strand, within exoD

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
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2,907,259 - +0.1
2,907,341 + -0.1
2,907,341 + +1.0
2,907,341 + +1.4
2,907,341 + -0.8
2,907,341 + +0.0
2,907,341 + -0.7
2,907,341 + -0.6
2,907,343 + -1.3
2,907,343 + -1.8
2,907,343 + -0.7
2,907,506 - MCAODC_14775 0.26 -0.7
2,907,793 + MCAODC_14775 0.56 -0.4
2,907,793 + MCAODC_14775 0.56 +1.2
2,907,927 + MCAODC_14775 0.70 +1.2
2,907,927 + MCAODC_14775 0.70 -0.9
2,907,927 + MCAODC_14775 0.70 -0.8
2,907,927 + MCAODC_14775 0.70 -0.4
2,908,133 - +0.9
2,908,133 - -1.6
2,908,133 - -0.7
2,908,133 - -0.2
2,908,133 - -1.8
2,908,301 - MCAODC_14780 0.44 -1.6
2,908,385 - MCAODC_14780 0.82 -3.5
2,908,496 - +0.3
2,908,765 + MCAODC_14790 0.35 +0.7
2,908,765 + MCAODC_14790 0.35 +1.9
2,908,765 + MCAODC_14790 0.35 +1.4
2,908,956 + MCAODC_14795 0.73 -1.7
2,909,007 + -0.8
2,909,007 + -0.7
2,909,028 + MCAODC_14800 0.26 -0.4
2,909,142 - MCAODC_14800 0.89 -2.3
2,909,142 - MCAODC_14800 0.89 +2.3
2,909,179 - -0.6
2,909,181 - +0.2
2,909,181 - +0.2
2,909,283 + exoD MCAODC_14805 0.18 +0.7
2,909,283 + exoD MCAODC_14805 0.18 -2.4
2,909,284 - exoD MCAODC_14805 0.18 -1.0
2,909,284 - exoD MCAODC_14805 0.18 -0.8
2,909,284 - exoD MCAODC_14805 0.18 +0.5
2,909,284 - exoD MCAODC_14805 0.18 -0.6
2,909,284 - exoD MCAODC_14805 0.18 -0.4
2,909,284 - exoD MCAODC_14805 0.18 -0.7
2,909,316 + exoD MCAODC_14805 0.23 -2.5
2,909,328 + exoD MCAODC_14805 0.24 -0.2
2,909,328 + exoD MCAODC_14805 0.24 -1.3

Or see this region's nucleotide sequence