Strain Fitness in Escherichia coli ECRC101 around MCAODC_06070

Experiment: WM_TP6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspoT and rpoZ are separated by 18 nucleotidesrpoZ and gmk are separated by 54 nucleotidesgmk and ligB are separated by 257 nucleotides MCAODC_06065: spoT - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 1,217,801 to 1,219,909 spoT MCAODC_06070: rpoZ - DNA-directed RNA polymerase subunit omega, at 1,219,928 to 1,220,203 rpoZ MCAODC_06075: gmk - guanylate kinase, at 1,220,258 to 1,220,881 gmk MCAODC_06080: ligB - NAD-dependent DNA ligase LigB, at 1,221,139 to 1,222,821 ligB Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1220.145 kb on - strand, within rpoZat 1220.175 kb on - strand, within rpoZat 1220.193 kb on - strandat 1220.208 kb on - strandat 1220.208 kb on - strandat 1220.208 kb on - strandat 1220.208 kb on - strandat 1220.895 kb on - strandat 1220.895 kb on - strandat 1220.895 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.922 kb on - strandat 1220.922 kb on - strandat 1220.922 kb on - strandat 1220.922 kb on - strandat 1220.922 kb on - strandat 1220.922 kb on - strandat 1220.957 kb on - strandat 1220.957 kb on - strandat 1220.957 kb on - strandat 1221.000 kb on + strandat 1221.028 kb on - strandat 1221.028 kb on - strandat 1221.035 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.105 kb on + strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.106 kb on - strandat 1221.107 kb on + strandat 1221.107 kb on + strandat 1221.107 kb on + strandat 1221.107 kb on + strandat 1221.146 kb on + strandat 1221.146 kb on + strandat 1221.147 kb on - strandat 1221.147 kb on - strandat 1221.161 kb on + strandat 1221.161 kb on + strandat 1221.161 kb on + strandat 1221.161 kb on + strandat 1221.162 kb on - strandat 1221.162 kb on - strandat 1221.162 kb on - strandat 1221.162 kb on - strandat 1221.162 kb on - strandat 1221.164 kb on + strandat 1221.164 kb on + strandat 1221.164 kb on + strandat 1221.164 kb on + strandat 1221.164 kb on + strandat 1221.164 kb on + strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.165 kb on - strandat 1221.168 kb on + strandat 1221.169 kb on - strandat 1221.169 kb on - strandat 1221.169 kb on - strandat 1221.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
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1,220,145 - rpoZ MCAODC_06070 0.79 -0.6
1,220,175 - rpoZ MCAODC_06070 0.89 -1.1
1,220,193 - -2.5
1,220,208 - +0.4
1,220,208 - -0.2
1,220,208 - -1.2
1,220,208 - -3.2
1,220,895 - -0.5
1,220,895 - +0.2
1,220,895 - -0.4
1,220,918 - -1.8
1,220,918 - -0.7
1,220,922 - -1.1
1,220,922 - +0.1
1,220,922 - -0.2
1,220,922 - +0.9
1,220,922 - +0.6
1,220,922 - +0.2
1,220,957 - -0.8
1,220,957 - +1.1
1,220,957 - -0.1
1,221,000 + +0.6
1,221,028 - +0.8
1,221,028 - -0.2
1,221,035 + -1.5
1,221,105 + -0.8
1,221,105 + +0.2
1,221,105 + -0.1
1,221,105 + +0.3
1,221,105 + +0.5
1,221,105 + -1.8
1,221,105 + -1.2
1,221,105 + -0.2
1,221,105 + +0.6
1,221,105 + -1.2
1,221,105 + +0.4
1,221,105 + -0.6
1,221,105 + +0.9
1,221,106 - +1.4
1,221,106 - +0.3
1,221,106 - +0.4
1,221,106 - -0.4
1,221,106 - -0.1
1,221,106 - -1.7
1,221,106 - -0.0
1,221,106 - +0.6
1,221,106 - +2.1
1,221,106 - +0.2
1,221,107 + +0.4
1,221,107 + +0.9
1,221,107 + +0.1
1,221,107 + -0.2
1,221,146 + +0.8
1,221,146 + +0.3
1,221,147 - +0.0
1,221,147 - +0.0
1,221,161 + -1.3
1,221,161 + +0.1
1,221,161 + +0.5
1,221,161 + +3.0
1,221,162 - -0.1
1,221,162 - -0.1
1,221,162 - -2.3
1,221,162 - -0.6
1,221,162 - +0.5
1,221,164 + +2.4
1,221,164 + +0.2
1,221,164 + -0.9
1,221,164 + +0.8
1,221,164 + -0.4
1,221,164 + -0.8
1,221,165 - -0.4
1,221,165 - +0.1
1,221,165 - -0.9
1,221,165 - +0.8
1,221,165 - -1.0
1,221,165 - +0.7
1,221,165 - -1.5
1,221,165 - -0.1
1,221,165 - +0.3
1,221,165 - -1.2
1,221,165 - -0.2
1,221,168 + +0.2
1,221,169 - +4.1
1,221,169 - -0.5
1,221,169 - +0.3
1,221,169 - +0.3

Or see this region's nucleotide sequence