Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yifL and cyaY are separated by 462 nucleotides cyaY and cyaA are separated by 39 nucleotides cyaA and hemC are separated by 365 nucleotides
MCAODC_04940: yifL - Uncharacterized lipoprotein YifL, at 997,767 to 997,970
yifL
MCAODC_04945: cyaY - iron donor protein CyaY, at 998,433 to 998,753
cyaY
MCAODC_04950: cyaA - class I adenylate cyclase, at 998,793 to 1,001,339
cyaA
MCAODC_04955: hemC - hydroxymethylbilane synthase, at 1,001,705 to 1,002,667
hemC
Position (kb) 998
999
1000
1001
1002 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 997.892 kb on - strand, within yifL at 997.935 kb on - strand, within yifL at 997.935 kb on - strand, within yifL at 997.938 kb on + strand, within yifL at 997.939 kb on - strand, within yifL at 997.939 kb on - strand, within yifL at 997.939 kb on - strand, within yifL at 997.939 kb on - strand, within yifL at 997.941 kb on + strand, within yifL at 997.984 kb on + strand at 997.984 kb on + strand at 998.008 kb on + strand at 998.008 kb on + strand at 998.009 kb on - strand at 998.028 kb on + strand at 998.029 kb on - strand at 998.029 kb on - strand at 998.053 kb on + strand at 998.054 kb on - strand at 998.054 kb on - strand at 998.086 kb on + strand at 998.086 kb on + strand at 998.087 kb on - strand at 998.088 kb on + strand at 998.095 kb on + strand at 998.095 kb on + strand at 998.096 kb on - strand at 998.109 kb on + strand at 998.109 kb on + strand at 998.109 kb on + strand at 998.110 kb on - strand at 998.110 kb on - strand at 998.110 kb on - strand at 998.110 kb on - strand at 998.110 kb on - strand at 998.158 kb on + strand at 998.165 kb on + strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.273 kb on - strand at 998.273 kb on - strand at 998.283 kb on + strand at 998.306 kb on + strand at 998.307 kb on - strand at 998.323 kb on - strand at 998.323 kb on - strand at 998.323 kb on - strand at 998.397 kb on + strand at 998.398 kb on - strand at 998.398 kb on - strand at 998.399 kb on + strand at 998.399 kb on + strand at 998.416 kb on - strand at 998.426 kb on + strand at 998.426 kb on + strand at 998.427 kb on - strand at 998.555 kb on + strand, within cyaY at 998.555 kb on + strand, within cyaY at 998.556 kb on - strand, within cyaY at 998.556 kb on - strand, within cyaY at 998.583 kb on - strand, within cyaY at 998.611 kb on + strand, within cyaY at 998.811 kb on + strand at 998.811 kb on + strand at 998.811 kb on + strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.812 kb on - strand at 998.822 kb on + strand at 998.914 kb on + strand at 998.981 kb on - strand at 999.001 kb on - strand at 999.035 kb on - strand at 999.067 kb on + strand, within cyaA at 999.067 kb on + strand, within cyaA at 999.067 kb on + strand, within cyaA at 999.067 kb on + strand, within cyaA at 999.068 kb on - strand, within cyaA at 999.068 kb on - strand, within cyaA at 999.074 kb on + strand, within cyaA at 999.075 kb on - strand, within cyaA at 999.075 kb on - strand, within cyaA at 999.075 kb on - strand, within cyaA at 999.075 kb on - strand, within cyaA at 999.075 kb on - strand, within cyaA at 999.255 kb on + strand, within cyaA at 999.256 kb on - strand, within cyaA at 999.736 kb on - strand, within cyaA at 999.817 kb on + strand, within cyaA at 999.987 kb on - strand, within cyaA at 1000.054 kb on - strand, within cyaA at 1000.054 kb on - strand, within cyaA at 1000.072 kb on + strand, within cyaA at 1000.073 kb on - strand, within cyaA at 1001.422 kb on - strand at 1001.540 kb on + strand at 1001.540 kb on + strand at 1001.544 kb on + strand at 1001.544 kb on + strand at 1001.544 kb on + strand at 1001.544 kb on + strand at 1001.544 kb on + strand at 1001.545 kb on - strand at 1001.545 kb on - strand at 1001.545 kb on - strand at 1001.545 kb on - strand at 1001.552 kb on + strand at 1001.552 kb on + strand at 1001.553 kb on - strand at 1001.553 kb on - strand at 1001.553 kb on - strand at 1001.553 kb on - strand at 1001.562 kb on + strand at 1001.562 kb on + strand at 1001.571 kb on + strand at 1001.583 kb on + strand at 1001.583 kb on + strand at 1001.584 kb on - strand at 1001.649 kb on + strand at 1001.649 kb on + strand at 1001.650 kb on - strand at 1001.690 kb on + strand at 1001.690 kb on + strand at 1001.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 997,892 - yifL MCAODC_04940 0.61 +0.5 997,935 - yifL MCAODC_04940 0.82 +0.7 997,935 - yifL MCAODC_04940 0.82 +0.0 997,938 + yifL MCAODC_04940 0.84 -2.6 997,939 - yifL MCAODC_04940 0.84 +0.7 997,939 - yifL MCAODC_04940 0.84 +2.2 997,939 - yifL MCAODC_04940 0.84 -3.5 997,939 - yifL MCAODC_04940 0.84 -0.8 997,941 + yifL MCAODC_04940 0.85 -2.0 997,984 + -2.3 997,984 + -0.1 998,008 + -0.3 998,008 + -0.5 998,009 - +1.1 998,028 + +1.0 998,029 - +0.8 998,029 - -0.6 998,053 + -0.6 998,054 - -0.1 998,054 - +1.5 998,086 + -0.5 998,086 + -0.8 998,087 - -1.0 998,088 + +1.2 998,095 + +0.9 998,095 + -1.5 998,096 - -1.0 998,109 + -0.6 998,109 + +0.5 998,109 + -0.0 998,110 - +0.5 998,110 - +1.2 998,110 - -0.8 998,110 - -1.6 998,110 - -1.9 998,158 + -0.7 998,165 + +0.3 998,240 - +0.3 998,240 - +1.7 998,240 - -1.1 998,240 - +0.2 998,240 - -0.4 998,273 - +1.6 998,273 - -1.3 998,283 + +0.4 998,306 + -1.0 998,307 - -0.2 998,323 - -0.2 998,323 - +1.1 998,323 - +0.6 998,397 + -1.2 998,398 - +1.0 998,398 - -0.4 998,399 + -1.6 998,399 + +0.4 998,416 - -1.4 998,426 + +1.5 998,426 + -1.8 998,427 - +1.0 998,555 + cyaY MCAODC_04945 0.38 -1.0 998,555 + cyaY MCAODC_04945 0.38 +0.1 998,556 - cyaY MCAODC_04945 0.38 -0.7 998,556 - cyaY MCAODC_04945 0.38 +1.8 998,583 - cyaY MCAODC_04945 0.47 +0.6 998,611 + cyaY MCAODC_04945 0.55 +0.2 998,811 + +0.7 998,811 + +0.8 998,811 + +1.2 998,812 - -0.3 998,812 - +0.8 998,812 - -0.7 998,812 - -0.1 998,812 - -1.2 998,812 - +2.0 998,812 - -0.7 998,822 + -0.4 998,914 + +1.3 998,981 - +1.8 999,001 - -0.3 999,035 - +0.0 999,067 + cyaA MCAODC_04950 0.11 -1.8 999,067 + cyaA MCAODC_04950 0.11 +1.8 999,067 + cyaA MCAODC_04950 0.11 +0.4 999,067 + cyaA MCAODC_04950 0.11 +1.2 999,068 - cyaA MCAODC_04950 0.11 -0.1 999,068 - cyaA MCAODC_04950 0.11 +0.5 999,074 + cyaA MCAODC_04950 0.11 -0.3 999,075 - cyaA MCAODC_04950 0.11 +0.0 999,075 - cyaA MCAODC_04950 0.11 +0.2 999,075 - cyaA MCAODC_04950 0.11 -1.5 999,075 - cyaA MCAODC_04950 0.11 +0.2 999,075 - cyaA MCAODC_04950 0.11 -0.4 999,255 + cyaA MCAODC_04950 0.18 -0.5 999,256 - cyaA MCAODC_04950 0.18 +0.5 999,736 - cyaA MCAODC_04950 0.37 +2.3 999,817 + cyaA MCAODC_04950 0.40 -0.1 999,987 - cyaA MCAODC_04950 0.47 -1.5 1,000,054 - cyaA MCAODC_04950 0.50 -1.7 1,000,054 - cyaA MCAODC_04950 0.50 +0.7 1,000,072 + cyaA MCAODC_04950 0.50 +2.7 1,000,073 - cyaA MCAODC_04950 0.50 +0.4 1,001,422 - +1.0 1,001,540 + -0.7 1,001,540 + -0.2 1,001,544 + -0.6 1,001,544 + +1.0 1,001,544 + -0.7 1,001,544 + +0.3 1,001,544 + -0.7 1,001,545 - -0.3 1,001,545 - -0.1 1,001,545 - -0.2 1,001,545 - -0.5 1,001,552 + -0.4 1,001,552 + -0.9 1,001,553 - +0.5 1,001,553 - -1.2 1,001,553 - -2.0 1,001,553 - +0.6 1,001,562 + +0.7 1,001,562 + -0.2 1,001,571 + +0.6 1,001,583 + -0.4 1,001,583 + +0.4 1,001,584 - +1.4 1,001,649 + +1.3 1,001,649 + -0.2 1,001,650 - -0.1 1,001,690 + +0.9 1,001,690 + +0.4 1,001,709 + +1.9
Or see this region's nucleotide sequence