Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihA and polA are separated by 381 nucleotides polA and MCAODC_04655 are separated by 58 nucleotides MCAODC_04655 and yihG are separated by 119 nucleotides
MCAODC_04640: yihA - ribosome biogenesis GTP-binding protein YihA/YsxC, at 939,432 to 940,064
yihA
MCAODC_04650: polA - DNA polymerase I, at 940,446 to 943,232
polA
MCAODC_04655: MCAODC_04655 - hypothetical protein, at 943,291 to 943,476
_04655
MCAODC_04660: yihG - putative acyltransferase YihG, at 943,596 to 944,528
yihG
Position (kb) 940
941
942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 940.039 kb on + strand at 940.076 kb on + strand at 940.076 kb on + strand at 940.076 kb on + strand at 940.084 kb on - strand at 940.125 kb on - strand at 940.146 kb on + strand at 940.167 kb on + strand at 940.249 kb on - strand at 940.274 kb on - strand at 940.274 kb on - strand at 940.284 kb on - strand at 940.284 kb on - strand at 940.311 kb on - strand at 940.377 kb on + strand at 940.380 kb on + strand at 940.380 kb on + strand at 940.380 kb on + strand at 940.381 kb on - strand at 940.381 kb on - strand at 940.381 kb on - strand at 940.404 kb on + strand at 940.404 kb on + strand at 940.404 kb on + strand at 940.404 kb on + strand at 940.404 kb on + strand at 940.404 kb on + strand at 940.404 kb on + strand at 940.404 kb on + strand at 940.404 kb on + strand at 940.405 kb on - strand at 940.405 kb on - strand at 940.405 kb on - strand at 940.405 kb on - strand at 940.405 kb on - strand at 940.413 kb on + strand at 940.413 kb on + strand at 940.413 kb on + strand at 940.413 kb on + strand at 940.413 kb on + strand at 940.413 kb on + strand at 940.413 kb on + strand at 940.414 kb on - strand at 940.414 kb on - strand at 940.414 kb on - strand at 940.414 kb on - strand at 940.414 kb on - strand at 940.418 kb on - strand at 940.447 kb on + strand at 940.448 kb on - strand at 940.448 kb on - strand at 941.138 kb on - strand, within polA at 941.257 kb on + strand, within polA at 941.258 kb on - strand, within polA at 942.245 kb on - strand, within polA at 943.285 kb on - strand at 943.379 kb on + strand, within MCAODC_04655 at 943.467 kb on + strand at 943.471 kb on - strand at 943.480 kb on - strand at 943.507 kb on + strand at 943.583 kb on + strand at 943.661 kb on + strand at 943.666 kb on + strand at 943.666 kb on + strand at 943.686 kb on - strand at 943.729 kb on + strand, within yihG at 943.729 kb on + strand, within yihG at 943.730 kb on - strand, within yihG at 943.735 kb on + strand, within yihG at 943.735 kb on + strand, within yihG at 943.735 kb on + strand, within yihG at 943.735 kb on + strand, within yihG at 943.736 kb on - strand, within yihG at 943.781 kb on + strand, within yihG at 943.781 kb on + strand, within yihG at 943.782 kb on - strand, within yihG at 943.782 kb on - strand, within yihG at 943.788 kb on + strand, within yihG at 943.788 kb on + strand, within yihG at 943.788 kb on + strand, within yihG at 943.788 kb on + strand, within yihG at 943.788 kb on + strand, within yihG at 943.788 kb on + strand, within yihG at 943.789 kb on - strand, within yihG at 943.789 kb on - strand, within yihG at 943.789 kb on - strand, within yihG at 943.789 kb on - strand, within yihG at 943.789 kb on - strand, within yihG at 943.813 kb on + strand, within yihG at 943.814 kb on - strand, within yihG at 943.816 kb on + strand, within yihG at 943.816 kb on + strand, within yihG at 943.867 kb on + strand, within yihG at 943.867 kb on + strand, within yihG at 943.868 kb on - strand, within yihG at 943.868 kb on - strand, within yihG at 943.872 kb on - strand, within yihG at 943.893 kb on - strand, within yihG at 943.893 kb on - strand, within yihG at 943.893 kb on - strand, within yihG at 943.898 kb on + strand, within yihG at 943.898 kb on + strand, within yihG at 943.899 kb on - strand, within yihG at 943.899 kb on - strand, within yihG at 943.899 kb on - strand, within yihG at 943.907 kb on + strand, within yihG at 943.907 kb on + strand, within yihG at 943.908 kb on - strand, within yihG at 943.919 kb on + strand, within yihG at 943.919 kb on + strand, within yihG at 943.920 kb on - strand, within yihG at 943.964 kb on + strand, within yihG at 944.031 kb on - strand, within yihG at 944.031 kb on - strand, within yihG at 944.031 kb on - strand, within yihG at 944.040 kb on - strand, within yihG at 944.050 kb on - strand, within yihG at 944.061 kb on + strand, within yihG at 944.061 kb on + strand, within yihG at 944.061 kb on + strand, within yihG at 944.062 kb on - strand, within yihG at 944.065 kb on + strand, within yihG at 944.065 kb on + strand, within yihG at 944.065 kb on + strand, within yihG at 944.066 kb on - strand, within yihG at 944.068 kb on + strand, within yihG at 944.068 kb on + strand, within yihG at 944.090 kb on + strand, within yihG at 944.091 kb on - strand, within yihG
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 940,039 + -0.2 940,076 + -0.3 940,076 + -1.4 940,076 + -0.8 940,084 - +0.7 940,125 - -2.8 940,146 + -0.2 940,167 + -2.5 940,249 - -1.2 940,274 - -0.7 940,274 - -0.2 940,284 - +1.3 940,284 - +1.0 940,311 - -0.4 940,377 + +0.3 940,380 + -0.9 940,380 + +0.7 940,380 + -1.0 940,381 - +0.5 940,381 - -0.5 940,381 - -0.9 940,404 + -1.6 940,404 + -1.2 940,404 + +1.0 940,404 + -0.1 940,404 + +1.1 940,404 + -0.6 940,404 + -0.3 940,404 + -0.4 940,404 + +0.5 940,405 - -0.1 940,405 - +0.0 940,405 - -1.4 940,405 - +0.2 940,405 - -1.4 940,413 + -0.3 940,413 + +0.6 940,413 + +0.1 940,413 + -0.3 940,413 + +0.9 940,413 + -1.2 940,413 + -0.2 940,414 - +0.8 940,414 - -0.2 940,414 - -0.6 940,414 - -0.2 940,414 - -0.4 940,418 - +0.3 940,447 + -0.9 940,448 - +0.7 940,448 - -0.2 941,138 - polA MCAODC_04650 0.25 -0.1 941,257 + polA MCAODC_04650 0.29 +1.8 941,258 - polA MCAODC_04650 0.29 +0.2 942,245 - polA MCAODC_04650 0.65 -0.5 943,285 - +0.8 943,379 + MCAODC_04655 0.47 +1.5 943,467 + +0.7 943,471 - +0.3 943,480 - +0.7 943,507 + -2.0 943,583 + -1.1 943,661 + -0.6 943,666 + -1.0 943,666 + +0.7 943,686 - +0.8 943,729 + yihG MCAODC_04660 0.14 -0.5 943,729 + yihG MCAODC_04660 0.14 +1.3 943,730 - yihG MCAODC_04660 0.14 +0.1 943,735 + yihG MCAODC_04660 0.15 +0.5 943,735 + yihG MCAODC_04660 0.15 -2.3 943,735 + yihG MCAODC_04660 0.15 -1.2 943,735 + yihG MCAODC_04660 0.15 +0.4 943,736 - yihG MCAODC_04660 0.15 +0.1 943,781 + yihG MCAODC_04660 0.20 -0.0 943,781 + yihG MCAODC_04660 0.20 +0.6 943,782 - yihG MCAODC_04660 0.20 -0.3 943,782 - yihG MCAODC_04660 0.20 +2.5 943,788 + yihG MCAODC_04660 0.21 +0.0 943,788 + yihG MCAODC_04660 0.21 -0.7 943,788 + yihG MCAODC_04660 0.21 -0.1 943,788 + yihG MCAODC_04660 0.21 -1.2 943,788 + yihG MCAODC_04660 0.21 -0.3 943,788 + yihG MCAODC_04660 0.21 +0.5 943,789 - yihG MCAODC_04660 0.21 +0.6 943,789 - yihG MCAODC_04660 0.21 -1.1 943,789 - yihG MCAODC_04660 0.21 -2.2 943,789 - yihG MCAODC_04660 0.21 +0.4 943,789 - yihG MCAODC_04660 0.21 +1.7 943,813 + yihG MCAODC_04660 0.23 +0.1 943,814 - yihG MCAODC_04660 0.23 -1.3 943,816 + yihG MCAODC_04660 0.24 +1.6 943,816 + yihG MCAODC_04660 0.24 -0.5 943,867 + yihG MCAODC_04660 0.29 +0.9 943,867 + yihG MCAODC_04660 0.29 +0.7 943,868 - yihG MCAODC_04660 0.29 +1.0 943,868 - yihG MCAODC_04660 0.29 -0.2 943,872 - yihG MCAODC_04660 0.30 -1.0 943,893 - yihG MCAODC_04660 0.32 +3.0 943,893 - yihG MCAODC_04660 0.32 -0.1 943,893 - yihG MCAODC_04660 0.32 +1.1 943,898 + yihG MCAODC_04660 0.32 +0.1 943,898 + yihG MCAODC_04660 0.32 -0.5 943,899 - yihG MCAODC_04660 0.32 -0.4 943,899 - yihG MCAODC_04660 0.32 -1.8 943,899 - yihG MCAODC_04660 0.32 -0.3 943,907 + yihG MCAODC_04660 0.33 -0.1 943,907 + yihG MCAODC_04660 0.33 -0.9 943,908 - yihG MCAODC_04660 0.33 +2.7 943,919 + yihG MCAODC_04660 0.35 -1.0 943,919 + yihG MCAODC_04660 0.35 +0.0 943,920 - yihG MCAODC_04660 0.35 -0.1 943,964 + yihG MCAODC_04660 0.39 +0.1 944,031 - yihG MCAODC_04660 0.47 +0.5 944,031 - yihG MCAODC_04660 0.47 +0.7 944,031 - yihG MCAODC_04660 0.47 +0.2 944,040 - yihG MCAODC_04660 0.48 +1.0 944,050 - yihG MCAODC_04660 0.49 +0.5 944,061 + yihG MCAODC_04660 0.50 +0.7 944,061 + yihG MCAODC_04660 0.50 +0.1 944,061 + yihG MCAODC_04660 0.50 -0.7 944,062 - yihG MCAODC_04660 0.50 +2.4 944,065 + yihG MCAODC_04660 0.50 -0.4 944,065 + yihG MCAODC_04660 0.50 +0.1 944,065 + yihG MCAODC_04660 0.50 -1.8 944,066 - yihG MCAODC_04660 0.50 +0.0 944,068 + yihG MCAODC_04660 0.51 -0.3 944,068 + yihG MCAODC_04660 0.51 +0.2 944,090 + yihG MCAODC_04660 0.53 -0.8 944,091 - yihG MCAODC_04660 0.53 -1.8
Or see this region's nucleotide sequence