Strain Fitness in Escherichia coli ECRC101 around MCAODC_01485

Experiment: WM_TP6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntispH and fkpB are separated by 1 nucleotidesfkpB and lspA are separated by 87 nucleotideslspA and ileS overlap by 1 nucleotides MCAODC_01480: ispH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 285,589 to 286,539 ispH MCAODC_01485: fkpB - FKBP-type peptidyl-prolyl cis-trans isomerase, at 286,541 to 286,990 fkpB MCAODC_01490: lspA - signal peptidase II, at 287,078 to 287,572 lspA MCAODC_01495: ileS - isoleucine--tRNA ligase, at 287,572 to 290,388 ileS Position (kb) 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 285.591 kb on - strandat 285.607 kb on - strandat 286.580 kb on - strandat 286.688 kb on - strand, within fkpBat 286.688 kb on - strand, within fkpBat 286.698 kb on - strand, within fkpBat 286.814 kb on - strand, within fkpBat 286.967 kb on - strandat 286.977 kb on - strandat 287.005 kb on - strandat 287.005 kb on - strandat 287.007 kb on - strandat 287.007 kb on - strandat 287.007 kb on - strandat 287.077 kb on - strandat 287.080 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP6
remove
285,591 - +0.7
285,607 - -0.2
286,580 - +0.4
286,688 - fkpB MCAODC_01485 0.33 -0.4
286,688 - fkpB MCAODC_01485 0.33 -1.1
286,698 - fkpB MCAODC_01485 0.35 -0.8
286,814 - fkpB MCAODC_01485 0.61 -1.7
286,967 - -0.4
286,977 - +0.2
287,005 - -0.7
287,005 - +0.8
287,007 - -0.2
287,007 - -0.8
287,007 - -1.0
287,077 - -3.0
287,080 - +2.1

Or see this region's nucleotide sequence