Experiment: WM_TP6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybcW and MCAODC_00010 are separated by 285 nucleotides MCAODC_00010 and bor are separated by 291 nucleotides bor and rzpD are separated by 31 nucleotides rzpD and MCAODC_00025 overlap by 4 nucleotides MCAODC_00025 and MCAODC_00030 overlap by 14 nucleotides
MCAODC_00005: ybcW - Uncharacterized protein YbcW, at 271 to 477
ybcW
MCAODC_00010: MCAODC_00010 - DUF1398 domain-containing protein, at 763 to 1,173
_00010
MCAODC_00015: bor - serum resistance lipoprotein Bor, at 1,465 to 1,758
bor
MCAODC_00020: rzpD - prophage endopeptidase RzpD, at 1,790 to 2,251
rzpD
MCAODC_00025: MCAODC_00025 - lysozyme, at 2,248 to 2,724
_00025
MCAODC_00030: MCAODC_00030 - Holin, at 2,711 to 3,016
_00030
Position (kb) 1
2 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 0.515 kb on - strand at 0.519 kb on + strand at 0.520 kb on - strand at 0.565 kb on - strand at 0.565 kb on - strand at 0.569 kb on - strand at 0.569 kb on - strand at 0.569 kb on - strand at 0.569 kb on - strand at 0.569 kb on - strand at 0.569 kb on - strand at 1.331 kb on - strand at 1.362 kb on + strand at 1.362 kb on + strand at 1.366 kb on - strand at 1.503 kb on + strand, within bor at 1.744 kb on + strand at 1.872 kb on + strand, within rzpD at 2.154 kb on + strand, within rzpD at 2.155 kb on - strand, within rzpD at 2.159 kb on - strand, within rzpD at 2.159 kb on - strand, within rzpD at 2.251 kb on + strand at 2.252 kb on - strand at 2.314 kb on - strand, within MCAODC_00025 at 2.358 kb on + strand, within MCAODC_00025 at 2.407 kb on - strand, within MCAODC_00025 at 2.407 kb on - strand, within MCAODC_00025 at 2.627 kb on + strand, within MCAODC_00025
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP6 remove 515 - +0.3 519 + -0.1 520 - -0.0 565 - +1.2 565 - +0.4 569 - +0.6 569 - -1.7 569 - -1.9 569 - -1.7 569 - -2.0 569 - +0.4 1,331 - +1.2 1,362 + +4.1 1,362 + +0.8 1,366 - +0.1 1,503 + bor MCAODC_00015 0.13 -1.0 1,744 + -1.6 1,872 + rzpD MCAODC_00020 0.18 -0.3 2,154 + rzpD MCAODC_00020 0.79 -0.3 2,155 - rzpD MCAODC_00020 0.79 -0.1 2,159 - rzpD MCAODC_00020 0.80 +0.2 2,159 - rzpD MCAODC_00020 0.80 +0.4 2,251 + +2.6 2,252 - -2.2 2,314 - MCAODC_00025 0.14 -0.9 2,358 + MCAODC_00025 0.23 +0.7 2,407 - MCAODC_00025 0.33 -0.7 2,407 - MCAODC_00025 0.33 +0.5 2,627 + MCAODC_00025 0.79 +0.3
Or see this region's nucleotide sequence