Strain Fitness in Escherichia coli ECRC101 around MCAODC_26065

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcydB and cydA are separated by 15 nucleotidescydA and MCAODC_26070 are separated by 805 nucleotides MCAODC_26060: cydB - cytochrome d ubiquinol oxidase subunit II, at 1,922,110 to 1,923,249 cydB MCAODC_26065: cydA - cytochrome ubiquinol oxidase subunit I, at 1,923,265 to 1,924,833 cydA MCAODC_26070: MCAODC_26070 - hypothetical protein, at 1,925,639 to 1,926,583 _26070 Position (kb) 1923 1924 1925Strain fitness (log2 ratio) -1 0 1at 1924.218 kb on - strand, within cydAat 1925.012 kb on - strandat 1925.012 kb on - strandat 1925.012 kb on - strandat 1925.018 kb on - strandat 1925.021 kb on - strandat 1925.091 kb on - strandat 1925.136 kb on - strandat 1925.177 kb on + strandat 1925.206 kb on - strandat 1925.206 kb on - strandat 1925.276 kb on + strandat 1925.311 kb on + strandat 1925.343 kb on - strandat 1925.343 kb on - strandat 1925.391 kb on - strandat 1925.406 kb on - strandat 1925.497 kb on + strandat 1925.552 kb on - strandat 1925.622 kb on - strandat 1925.638 kb on + strandat 1925.639 kb on - strandat 1925.650 kb on + strandat 1925.653 kb on + strandat 1925.749 kb on - strand, within MCAODC_26070at 1925.752 kb on - strand, within MCAODC_26070at 1925.803 kb on + strand, within MCAODC_26070at 1925.811 kb on - strand, within MCAODC_26070at 1925.812 kb on + strand, within MCAODC_26070at 1925.813 kb on - strand, within MCAODC_26070

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,924,218 - cydA MCAODC_26065 0.61 -1.0
1,925,012 - +1.1
1,925,012 - -1.2
1,925,012 - +0.4
1,925,018 - +0.5
1,925,021 - -0.6
1,925,091 - +0.6
1,925,136 - +1.7
1,925,177 + +0.2
1,925,206 - -1.6
1,925,206 - +0.1
1,925,276 + +0.5
1,925,311 + +0.2
1,925,343 - +0.2
1,925,343 - +0.8
1,925,391 - +1.5
1,925,406 - -0.2
1,925,497 + -0.8
1,925,552 - +1.0
1,925,622 - -0.1
1,925,638 + -0.4
1,925,639 - -0.8
1,925,650 + -0.5
1,925,653 + -1.0
1,925,749 - MCAODC_26070 0.12 -0.2
1,925,752 - MCAODC_26070 0.12 +1.0
1,925,803 + MCAODC_26070 0.17 -0.9
1,925,811 - MCAODC_26070 0.18 +0.5
1,925,812 + MCAODC_26070 0.18 -0.5
1,925,813 - MCAODC_26070 0.18 -0.2

Or see this region's nucleotide sequence