Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tlyC and MCAODC_20650 are separated by 74 nucleotides MCAODC_20650 and MCAODC_20655 overlap by 11 nucleotides MCAODC_20655 and asmA are separated by 52 nucleotides
MCAODC_20645: tlyC - Integral membrane protein TerC family, at 941,167 to 942,750
tlyC
MCAODC_20650: MCAODC_20650 - Addiction module toxin RelE, at 942,825 to 943,163
_20650
MCAODC_20655: MCAODC_20655 - transcriptional regulator, at 943,153 to 943,443
_20655
MCAODC_20660: asmA - outer membrane assembly protein AsmA, at 943,496 to 945,349
asmA
Position (kb) 943
944 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 942.165 kb on + strand, within tlyC at 942.165 kb on + strand, within tlyC at 942.440 kb on + strand, within tlyC at 942.441 kb on - strand, within tlyC at 942.477 kb on + strand, within tlyC at 942.477 kb on + strand, within tlyC at 942.544 kb on + strand, within tlyC at 942.544 kb on + strand, within tlyC at 942.544 kb on + strand, within tlyC at 942.544 kb on + strand, within tlyC at 942.544 kb on + strand, within tlyC at 942.577 kb on + strand, within tlyC at 942.618 kb on + strand at 942.619 kb on - strand at 942.655 kb on + strand at 942.708 kb on + strand at 942.708 kb on + strand at 942.710 kb on + strand at 942.739 kb on + strand at 942.751 kb on + strand at 942.807 kb on + strand at 942.823 kb on + strand at 942.868 kb on + strand, within MCAODC_20650 at 943.014 kb on + strand, within MCAODC_20650 at 943.014 kb on + strand, within MCAODC_20650 at 943.026 kb on + strand, within MCAODC_20650 at 943.026 kb on + strand, within MCAODC_20650 at 943.026 kb on + strand, within MCAODC_20650 at 943.026 kb on + strand, within MCAODC_20650 at 943.053 kb on + strand, within MCAODC_20650 at 943.126 kb on - strand, within MCAODC_20650 at 943.127 kb on + strand, within MCAODC_20650 at 943.400 kb on + strand, within MCAODC_20655 at 943.400 kb on + strand, within MCAODC_20655 at 943.404 kb on + strand, within MCAODC_20655 at 943.404 kb on + strand, within MCAODC_20655 at 943.413 kb on + strand, within MCAODC_20655 at 943.448 kb on - strand at 943.484 kb on - strand at 943.484 kb on - strand at 943.484 kb on - strand at 943.484 kb on - strand at 943.484 kb on - strand at 943.484 kb on - strand at 943.485 kb on + strand at 943.486 kb on - strand at 943.486 kb on - strand at 943.486 kb on - strand at 943.486 kb on - strand at 943.486 kb on - strand at 943.487 kb on + strand at 943.488 kb on - strand at 943.488 kb on - strand at 943.488 kb on - strand at 943.488 kb on - strand at 943.488 kb on - strand at 943.488 kb on - strand at 943.488 kb on - strand at 943.488 kb on - strand at 943.497 kb on + strand at 943.498 kb on - strand at 943.498 kb on - strand at 943.498 kb on - strand at 943.629 kb on + strand at 943.881 kb on - strand, within asmA at 944.034 kb on - strand, within asmA at 944.092 kb on - strand, within asmA at 944.095 kb on + strand, within asmA at 944.163 kb on - strand, within asmA at 944.163 kb on - strand, within asmA at 944.223 kb on - strand, within asmA at 944.231 kb on - strand, within asmA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 942,165 + tlyC MCAODC_20645 0.63 +0.1 942,165 + tlyC MCAODC_20645 0.63 +0.6 942,440 + tlyC MCAODC_20645 0.80 -1.3 942,441 - tlyC MCAODC_20645 0.80 +0.6 942,477 + tlyC MCAODC_20645 0.83 +0.9 942,477 + tlyC MCAODC_20645 0.83 -0.0 942,544 + tlyC MCAODC_20645 0.87 +0.1 942,544 + tlyC MCAODC_20645 0.87 -1.7 942,544 + tlyC MCAODC_20645 0.87 -0.0 942,544 + tlyC MCAODC_20645 0.87 +0.2 942,544 + tlyC MCAODC_20645 0.87 -0.2 942,577 + tlyC MCAODC_20645 0.89 -0.3 942,618 + -0.5 942,619 - -0.6 942,655 + +1.2 942,708 + +1.9 942,708 + +1.9 942,710 + -2.1 942,739 + +0.6 942,751 + -1.4 942,807 + -0.7 942,823 + +0.6 942,868 + MCAODC_20650 0.13 -0.3 943,014 + MCAODC_20650 0.56 +1.6 943,014 + MCAODC_20650 0.56 +4.5 943,026 + MCAODC_20650 0.59 +0.0 943,026 + MCAODC_20650 0.59 +0.5 943,026 + MCAODC_20650 0.59 -0.2 943,026 + MCAODC_20650 0.59 +2.0 943,053 + MCAODC_20650 0.67 -0.3 943,126 - MCAODC_20650 0.89 +0.9 943,127 + MCAODC_20650 0.89 -0.4 943,400 + MCAODC_20655 0.85 -0.2 943,400 + MCAODC_20655 0.85 -0.9 943,404 + MCAODC_20655 0.86 -0.0 943,404 + MCAODC_20655 0.86 -1.1 943,413 + MCAODC_20655 0.89 -1.8 943,448 - -0.4 943,484 - +0.3 943,484 - -2.1 943,484 - -0.1 943,484 - +0.4 943,484 - +0.1 943,484 - -2.5 943,485 + +2.2 943,486 - -0.4 943,486 - -0.8 943,486 - +0.2 943,486 - +0.7 943,486 - +0.3 943,487 + -0.6 943,488 - -0.1 943,488 - -0.4 943,488 - +0.6 943,488 - +0.4 943,488 - -0.3 943,488 - -0.0 943,488 - -0.5 943,488 - +0.1 943,497 + -1.2 943,498 - -1.5 943,498 - -0.0 943,498 - -0.3 943,629 + -1.3 943,881 - asmA MCAODC_20660 0.21 -0.4 944,034 - asmA MCAODC_20660 0.29 -1.0 944,092 - asmA MCAODC_20660 0.32 -1.6 944,095 + asmA MCAODC_20660 0.32 -0.4 944,163 - asmA MCAODC_20660 0.36 +0.0 944,163 - asmA MCAODC_20660 0.36 +0.3 944,223 - asmA MCAODC_20660 0.39 +0.0 944,231 - asmA MCAODC_20660 0.40 +1.0
Or see this region's nucleotide sequence