Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19410 and MCAODC_19415 are separated by 11 nucleotides MCAODC_19415 and MCAODC_19420 overlap by 4 nucleotides MCAODC_19420 and MCAODC_19425 are separated by 92 nucleotides MCAODC_19425 and MCAODC_19430 are separated by 23 nucleotides MCAODC_19430 and marR overlap by 4 nucleotides marR and MCAODC_19440 overlap by 4 nucleotides MCAODC_19440 and MCAODC_19455 are separated by 322 nucleotides
MCAODC_19410: MCAODC_19410 - hypothetical protein, at 725,734 to 726,012
_19410
MCAODC_19415: MCAODC_19415 - DUF4754 domain-containing protein, at 726,024 to 726,266
_19415
MCAODC_19420: MCAODC_19420 - Membrane protein, at 726,263 to 726,376
_19420
MCAODC_19425: MCAODC_19425 - Phage protein, at 726,469 to 726,885
_19425
MCAODC_19430: MCAODC_19430 - hypothetical protein, at 726,909 to 727,112
_19430
MCAODC_19435: marR - MarR family transcriptional regulator, at 727,109 to 727,375
marR
MCAODC_19440: MCAODC_19440 - hypothetical protein, at 727,372 to 727,671
_19440
MCAODC_19455: MCAODC_19455 - derepression protein, at 727,994 to 728,224
_19455
Position (kb) 726
727
728 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 726.246 kb on - strand at 726.740 kb on - strand, within MCAODC_19425 at 726.747 kb on + strand, within MCAODC_19425 at 726.845 kb on + strand at 726.883 kb on + strand at 726.889 kb on + strand at 726.917 kb on + strand at 726.918 kb on - strand at 726.942 kb on - strand, within MCAODC_19430 at 727.029 kb on + strand, within MCAODC_19430 at 727.029 kb on + strand, within MCAODC_19430 at 727.047 kb on + strand, within MCAODC_19430 at 727.047 kb on + strand, within MCAODC_19430 at 727.047 kb on + strand, within MCAODC_19430 at 727.048 kb on - strand, within MCAODC_19430 at 727.076 kb on - strand, within MCAODC_19430 at 727.093 kb on + strand at 727.093 kb on + strand at 727.196 kb on - strand, within marR at 727.299 kb on + strand, within marR at 727.300 kb on - strand, within marR at 727.322 kb on - strand, within marR at 727.322 kb on - strand, within marR at 727.334 kb on - strand, within marR at 727.353 kb on + strand at 727.397 kb on + strand at 727.397 kb on + strand at 727.728 kb on + strand at 727.820 kb on + strand at 727.820 kb on + strand at 727.821 kb on - strand at 727.964 kb on - strand at 728.104 kb on + strand, within MCAODC_19455 at 728.104 kb on + strand, within MCAODC_19455
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 726,246 - -0.0 726,740 - MCAODC_19425 0.65 +2.2 726,747 + MCAODC_19425 0.67 -1.6 726,845 + -1.4 726,883 + -2.8 726,889 + -2.8 726,917 + -3.1 726,918 - +0.7 726,942 - MCAODC_19430 0.16 -0.0 727,029 + MCAODC_19430 0.59 -1.5 727,029 + MCAODC_19430 0.59 -3.0 727,047 + MCAODC_19430 0.68 +0.4 727,047 + MCAODC_19430 0.68 -3.4 727,047 + MCAODC_19430 0.68 -4.7 727,048 - MCAODC_19430 0.68 +1.8 727,076 - MCAODC_19430 0.82 +1.1 727,093 + +3.2 727,093 + -0.5 727,196 - marR MCAODC_19435 0.33 -1.7 727,299 + marR MCAODC_19435 0.71 -2.6 727,300 - marR MCAODC_19435 0.72 -0.8 727,322 - marR MCAODC_19435 0.80 -0.2 727,322 - marR MCAODC_19435 0.80 +1.1 727,334 - marR MCAODC_19435 0.84 -1.1 727,353 + -0.3 727,397 + -2.6 727,397 + -1.0 727,728 + -0.5 727,820 + -0.4 727,820 + -0.4 727,821 - +0.2 727,964 - +1.3 728,104 + MCAODC_19455 0.48 -0.7 728,104 + MCAODC_19455 0.48 -0.6
Or see this region's nucleotide sequence