Strain Fitness in Escherichia coli ECRC101 around MCAODC_16725

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimC and fimA are separated by 360 nucleotidesfimA and MCAODC_16730 are separated by 973 nucleotides MCAODC_16720: fimC - fimbrial chaperone protein FimC, at 250,366 to 251,076 fimC MCAODC_16725: fimA - type 1 fimbrial major subunit FimA, at 251,437 to 252,000 fimA MCAODC_16730: MCAODC_16730 - Protein HipA, at 252,974 to 253,996 _16730 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1at 250.558 kb on - strand, within fimCat 251.195 kb on - strandat 251.401 kb on + strandat 251.419 kb on - strandat 251.588 kb on - strand, within fimAat 251.599 kb on - strand, within fimAat 251.686 kb on - strand, within fimAat 251.686 kb on - strand, within fimAat 251.749 kb on - strand, within fimAat 252.026 kb on - strandat 252.051 kb on - strandat 252.176 kb on - strandat 252.191 kb on - strandat 252.299 kb on - strandat 252.372 kb on - strandat 252.760 kb on - strandat 252.975 kb on + strandat 252.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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250,558 - fimC MCAODC_16720 0.27 +0.3
251,195 - -1.2
251,401 + +0.4
251,419 - -0.2
251,588 - fimA MCAODC_16725 0.27 -0.9
251,599 - fimA MCAODC_16725 0.29 -1.0
251,686 - fimA MCAODC_16725 0.44 -2.1
251,686 - fimA MCAODC_16725 0.44 -0.9
251,749 - fimA MCAODC_16725 0.55 +0.9
252,026 - -2.6
252,051 - -0.3
252,176 - +1.1
252,191 - -0.6
252,299 - -1.3
252,372 - -0.0
252,760 - +0.9
252,975 + +0.5
252,998 + +0.6

Or see this region's nucleotide sequence