Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yubD and MCAODC_15450 are separated by 0 nucleotides MCAODC_15450 and yubF are separated by 13 nucleotides yubF and yubG are separated by 45 nucleotides
MCAODC_15445: yubD - Putative methylase YubD, at 74,918 to 75,601
yubD
MCAODC_15450: MCAODC_15450 - hypothetical protein, at 75,602 to 75,823
_15450
MCAODC_15455: yubF - Uncharacterized protein YubF, at 75,837 to 76,271
yubF
MCAODC_15460: yubG - Uncharacterized protein YubG, at 76,317 to 77,093
yubG
Position (kb) 75
76 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 74.717 kb on - strand at 74.717 kb on - strand at 74.771 kb on + strand at 74.917 kb on + strand at 74.917 kb on + strand at 74.917 kb on + strand at 74.917 kb on + strand at 74.917 kb on + strand at 74.917 kb on + strand at 74.918 kb on - strand at 74.918 kb on - strand at 74.918 kb on - strand at 74.918 kb on - strand at 74.918 kb on - strand at 74.918 kb on - strand at 74.930 kb on - strand at 74.954 kb on - strand at 75.052 kb on + strand, within yubD at 75.132 kb on - strand, within yubD at 75.218 kb on + strand, within yubD at 75.219 kb on - strand, within yubD at 75.219 kb on - strand, within yubD at 75.219 kb on - strand, within yubD at 75.219 kb on - strand, within yubD at 75.236 kb on + strand, within yubD at 75.236 kb on + strand, within yubD at 75.236 kb on + strand, within yubD at 75.237 kb on - strand, within yubD at 75.263 kb on + strand, within yubD at 75.263 kb on + strand, within yubD at 75.263 kb on + strand, within yubD at 75.263 kb on + strand, within yubD at 75.263 kb on + strand, within yubD at 75.263 kb on + strand, within yubD at 75.263 kb on + strand, within yubD at 75.263 kb on + strand, within yubD at 75.264 kb on - strand, within yubD at 75.264 kb on - strand, within yubD at 75.264 kb on - strand, within yubD at 75.264 kb on - strand, within yubD at 75.264 kb on - strand, within yubD at 75.329 kb on + strand, within yubD at 75.330 kb on - strand, within yubD at 75.480 kb on - strand, within yubD at 75.480 kb on - strand, within yubD at 75.481 kb on + strand, within yubD at 75.482 kb on - strand, within yubD at 75.507 kb on - strand, within yubD at 75.507 kb on - strand, within yubD at 75.584 kb on - strand at 75.599 kb on + strand at 75.599 kb on + strand at 75.600 kb on - strand at 75.608 kb on + strand at 75.608 kb on + strand at 75.608 kb on + strand at 75.608 kb on + strand at 75.609 kb on - strand at 75.688 kb on + strand, within MCAODC_15450 at 75.782 kb on + strand, within MCAODC_15450 at 75.782 kb on + strand, within MCAODC_15450 at 75.783 kb on - strand, within MCAODC_15450 at 75.783 kb on - strand, within MCAODC_15450 at 75.783 kb on - strand, within MCAODC_15450 at 75.783 kb on - strand, within MCAODC_15450 at 75.892 kb on - strand, within yubF at 75.892 kb on - strand, within yubF at 75.893 kb on + strand, within yubF at 75.893 kb on + strand, within yubF at 75.893 kb on + strand, within yubF at 75.893 kb on + strand, within yubF at 75.893 kb on + strand, within yubF at 75.893 kb on + strand, within yubF at 75.893 kb on + strand, within yubF at 75.894 kb on - strand, within yubF at 75.911 kb on + strand, within yubF at 75.911 kb on + strand, within yubF at 75.957 kb on - strand, within yubF at 75.957 kb on - strand, within yubF at 76.037 kb on + strand, within yubF at 76.064 kb on + strand, within yubF at 76.297 kb on + strand at 76.312 kb on + strand at 76.425 kb on + strand, within yubG at 76.446 kb on + strand, within yubG at 76.446 kb on + strand, within yubG at 76.446 kb on + strand, within yubG at 76.446 kb on + strand, within yubG at 76.446 kb on + strand, within yubG at 76.446 kb on + strand, within yubG at 76.446 kb on + strand, within yubG at 76.447 kb on - strand, within yubG at 76.447 kb on - strand, within yubG at 76.447 kb on - strand, within yubG at 76.447 kb on - strand, within yubG at 76.447 kb on - strand, within yubG at 76.447 kb on - strand, within yubG at 76.447 kb on - strand, within yubG at 76.447 kb on - strand, within yubG at 76.480 kb on + strand, within yubG at 76.504 kb on + strand, within yubG at 76.504 kb on + strand, within yubG at 76.672 kb on + strand, within yubG at 76.673 kb on - strand, within yubG at 76.727 kb on + strand, within yubG at 76.727 kb on + strand, within yubG
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 74,717 - +0.9 74,717 - -1.0 74,771 + +0.4 74,917 + -0.9 74,917 + -1.8 74,917 + +2.7 74,917 + +0.1 74,917 + -0.5 74,917 + +1.5 74,918 - +1.2 74,918 - -0.2 74,918 - +1.7 74,918 - -1.0 74,918 - -2.0 74,918 - -0.8 74,930 - +0.6 74,954 - -2.1 75,052 + yubD MCAODC_15445 0.20 +0.5 75,132 - yubD MCAODC_15445 0.31 +2.3 75,218 + yubD MCAODC_15445 0.44 +0.7 75,219 - yubD MCAODC_15445 0.44 +0.7 75,219 - yubD MCAODC_15445 0.44 -0.1 75,219 - yubD MCAODC_15445 0.44 +0.7 75,219 - yubD MCAODC_15445 0.44 -0.7 75,236 + yubD MCAODC_15445 0.46 +0.5 75,236 + yubD MCAODC_15445 0.46 -0.3 75,236 + yubD MCAODC_15445 0.46 +1.2 75,237 - yubD MCAODC_15445 0.47 +0.3 75,263 + yubD MCAODC_15445 0.50 -0.3 75,263 + yubD MCAODC_15445 0.50 -0.2 75,263 + yubD MCAODC_15445 0.50 -0.1 75,263 + yubD MCAODC_15445 0.50 +0.3 75,263 + yubD MCAODC_15445 0.50 +2.2 75,263 + yubD MCAODC_15445 0.50 -0.5 75,263 + yubD MCAODC_15445 0.50 -1.4 75,263 + yubD MCAODC_15445 0.50 +2.6 75,264 - yubD MCAODC_15445 0.51 +2.0 75,264 - yubD MCAODC_15445 0.51 -0.7 75,264 - yubD MCAODC_15445 0.51 -1.2 75,264 - yubD MCAODC_15445 0.51 +2.7 75,264 - yubD MCAODC_15445 0.51 +1.3 75,329 + yubD MCAODC_15445 0.60 +0.4 75,330 - yubD MCAODC_15445 0.60 +0.9 75,480 - yubD MCAODC_15445 0.82 +0.0 75,480 - yubD MCAODC_15445 0.82 -0.9 75,481 + yubD MCAODC_15445 0.82 +0.5 75,482 - yubD MCAODC_15445 0.82 -1.2 75,507 - yubD MCAODC_15445 0.86 +1.8 75,507 - yubD MCAODC_15445 0.86 -0.4 75,584 - +0.2 75,599 + +4.2 75,599 + -1.4 75,600 - +0.7 75,608 + -0.8 75,608 + +1.1 75,608 + -0.5 75,608 + -0.4 75,609 - +4.2 75,688 + MCAODC_15450 0.39 -0.4 75,782 + MCAODC_15450 0.81 -2.1 75,782 + MCAODC_15450 0.81 -1.6 75,783 - MCAODC_15450 0.82 -0.1 75,783 - MCAODC_15450 0.82 -0.8 75,783 - MCAODC_15450 0.82 +1.7 75,783 - MCAODC_15450 0.82 -0.2 75,892 - yubF MCAODC_15455 0.13 -0.3 75,892 - yubF MCAODC_15455 0.13 -0.6 75,893 + yubF MCAODC_15455 0.13 +0.0 75,893 + yubF MCAODC_15455 0.13 +0.9 75,893 + yubF MCAODC_15455 0.13 +0.4 75,893 + yubF MCAODC_15455 0.13 +0.1 75,893 + yubF MCAODC_15455 0.13 +3.8 75,893 + yubF MCAODC_15455 0.13 +0.3 75,893 + yubF MCAODC_15455 0.13 +1.3 75,894 - yubF MCAODC_15455 0.13 +0.4 75,911 + yubF MCAODC_15455 0.17 -0.4 75,911 + yubF MCAODC_15455 0.17 +2.0 75,957 - yubF MCAODC_15455 0.28 +0.3 75,957 - yubF MCAODC_15455 0.28 -0.3 76,037 + yubF MCAODC_15455 0.46 -0.0 76,064 + yubF MCAODC_15455 0.52 -0.6 76,297 + -0.0 76,312 + -0.2 76,425 + yubG MCAODC_15460 0.14 +1.3 76,446 + yubG MCAODC_15460 0.17 -0.1 76,446 + yubG MCAODC_15460 0.17 +0.5 76,446 + yubG MCAODC_15460 0.17 -0.2 76,446 + yubG MCAODC_15460 0.17 +0.2 76,446 + yubG MCAODC_15460 0.17 -0.5 76,446 + yubG MCAODC_15460 0.17 -0.7 76,446 + yubG MCAODC_15460 0.17 -0.4 76,447 - yubG MCAODC_15460 0.17 +0.5 76,447 - yubG MCAODC_15460 0.17 +0.9 76,447 - yubG MCAODC_15460 0.17 +0.4 76,447 - yubG MCAODC_15460 0.17 -1.3 76,447 - yubG MCAODC_15460 0.17 -0.4 76,447 - yubG MCAODC_15460 0.17 +0.9 76,447 - yubG MCAODC_15460 0.17 -0.6 76,447 - yubG MCAODC_15460 0.17 +0.7 76,480 + yubG MCAODC_15460 0.21 -0.8 76,504 + yubG MCAODC_15460 0.24 +0.7 76,504 + yubG MCAODC_15460 0.24 -0.2 76,672 + yubG MCAODC_15460 0.46 -1.5 76,673 - yubG MCAODC_15460 0.46 +1.1 76,727 + yubG MCAODC_15460 0.53 +2.7 76,727 + yubG MCAODC_15460 0.53 -1.2
Or see this region's nucleotide sequence