Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xerD and MCAODC_15360 are separated by 89 nucleotides MCAODC_15360 and repA are separated by 75 nucleotides
MCAODC_15355: xerD - recombinase, at 60,432 to 61,172
xerD
MCAODC_15360: MCAODC_15360 - hypothetical protein, at 61,262 to 61,381
_15360
MCAODC_15365: repA - RepFIB replication protein A, at 61,457 to 62,434
repA
Position (kb) 61
62 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 60.281 kb on - strand at 60.351 kb on + strand at 60.351 kb on + strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.387 kb on + strand at 60.416 kb on - strand at 60.597 kb on + strand, within xerD at 60.597 kb on + strand, within xerD at 60.597 kb on + strand, within xerD at 60.597 kb on + strand, within xerD at 60.598 kb on - strand, within xerD at 60.598 kb on - strand, within xerD at 60.598 kb on - strand, within xerD at 60.598 kb on - strand, within xerD at 60.598 kb on - strand, within xerD at 60.599 kb on + strand, within xerD at 60.600 kb on - strand, within xerD at 60.620 kb on + strand, within xerD at 60.620 kb on + strand, within xerD at 60.620 kb on + strand, within xerD at 60.620 kb on + strand, within xerD at 60.620 kb on + strand, within xerD at 60.621 kb on - strand, within xerD at 60.621 kb on - strand, within xerD at 60.621 kb on - strand, within xerD at 60.657 kb on - strand, within xerD at 60.799 kb on + strand, within xerD at 60.799 kb on + strand, within xerD at 60.799 kb on + strand, within xerD at 60.800 kb on - strand, within xerD at 60.800 kb on - strand, within xerD at 60.800 kb on - strand, within xerD at 60.800 kb on - strand, within xerD at 60.800 kb on - strand, within xerD at 60.800 kb on - strand, within xerD at 60.804 kb on + strand, within xerD at 60.804 kb on + strand, within xerD at 60.804 kb on + strand, within xerD at 60.804 kb on + strand, within xerD at 60.804 kb on + strand, within xerD at 60.805 kb on - strand, within xerD at 60.805 kb on - strand, within xerD at 60.805 kb on - strand, within xerD at 60.805 kb on - strand, within xerD at 60.934 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.978 kb on + strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.979 kb on - strand, within xerD at 60.980 kb on + strand, within xerD at 60.980 kb on + strand, within xerD at 60.980 kb on + strand, within xerD at 60.981 kb on - strand, within xerD at 60.981 kb on - strand, within xerD at 60.981 kb on - strand, within xerD at 60.981 kb on - strand, within xerD at 60.981 kb on - strand, within xerD at 60.981 kb on - strand, within xerD at 60.989 kb on + strand, within xerD at 60.989 kb on + strand, within xerD at 60.989 kb on + strand, within xerD at 60.989 kb on + strand, within xerD at 60.989 kb on + strand, within xerD at 60.989 kb on + strand, within xerD at 60.989 kb on + strand, within xerD at 60.989 kb on + strand, within xerD at 60.990 kb on - strand, within xerD at 60.990 kb on - strand, within xerD at 60.990 kb on - strand, within xerD at 60.990 kb on - strand, within xerD at 60.990 kb on - strand, within xerD at 61.065 kb on + strand, within xerD at 61.065 kb on + strand, within xerD at 61.065 kb on + strand, within xerD at 61.066 kb on - strand, within xerD at 61.066 kb on - strand, within xerD at 61.067 kb on + strand, within xerD at 61.067 kb on + strand, within xerD at 61.151 kb on + strand at 61.151 kb on + strand at 61.178 kb on + strand at 61.179 kb on - strand at 61.190 kb on + strand at 61.190 kb on + strand at 61.190 kb on + strand at 61.191 kb on - strand at 61.191 kb on - strand at 61.194 kb on + strand at 61.195 kb on - strand at 61.195 kb on - strand at 61.195 kb on - strand at 61.219 kb on + strand at 61.220 kb on - strand at 61.225 kb on - strand at 61.238 kb on + strand at 61.238 kb on + strand at 61.242 kb on + strand at 61.243 kb on - strand at 61.243 kb on - strand at 61.257 kb on - strand at 61.268 kb on + strand at 61.268 kb on + strand at 61.268 kb on + strand at 61.268 kb on + strand at 61.315 kb on - strand, within MCAODC_15360 at 61.342 kb on - strand, within MCAODC_15360 at 61.369 kb on + strand, within MCAODC_15360 at 61.409 kb on + strand at 61.409 kb on + strand at 61.409 kb on + strand at 61.409 kb on + strand at 61.410 kb on - strand at 61.410 kb on - strand at 61.410 kb on - strand at 61.410 kb on - strand at 61.410 kb on - strand at 61.445 kb on + strand at 61.445 kb on + strand at 61.445 kb on + strand at 61.582 kb on + strand, within repA at 61.583 kb on - strand, within repA at 61.583 kb on - strand, within repA at 61.666 kb on - strand, within repA at 61.674 kb on + strand, within repA at 61.674 kb on + strand, within repA at 61.674 kb on + strand, within repA at 61.805 kb on + strand, within repA at 61.805 kb on + strand, within repA at 61.805 kb on + strand, within repA at 61.806 kb on - strand, within repA at 61.815 kb on + strand, within repA at 61.815 kb on + strand, within repA at 61.815 kb on + strand, within repA at 61.816 kb on - strand, within repA at 61.852 kb on + strand, within repA at 61.852 kb on + strand, within repA at 61.853 kb on - strand, within repA at 61.893 kb on + strand, within repA at 61.894 kb on - strand, within repA at 61.922 kb on + strand, within repA at 61.923 kb on - strand, within repA at 61.951 kb on - strand, within repA at 61.953 kb on + strand, within repA at 61.953 kb on + strand, within repA at 61.954 kb on - strand, within repA at 61.980 kb on + strand, within repA at 61.981 kb on - strand, within repA at 62.093 kb on + strand, within repA at 62.096 kb on - strand, within repA at 62.148 kb on - strand, within repA at 62.148 kb on - strand, within repA at 62.293 kb on + strand, within repA at 62.294 kb on - strand, within repA at 62.379 kb on - strand at 62.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 60,281 - -2.2 60,351 + +1.0 60,351 + +1.3 60,352 - +1.7 60,352 - +1.0 60,387 + +0.7 60,416 - +1.2 60,597 + xerD MCAODC_15355 0.22 -0.7 60,597 + xerD MCAODC_15355 0.22 -0.2 60,597 + xerD MCAODC_15355 0.22 +0.8 60,597 + xerD MCAODC_15355 0.22 -0.6 60,598 - xerD MCAODC_15355 0.22 +2.4 60,598 - xerD MCAODC_15355 0.22 +0.3 60,598 - xerD MCAODC_15355 0.22 -1.1 60,598 - xerD MCAODC_15355 0.22 +0.3 60,598 - xerD MCAODC_15355 0.22 +1.2 60,599 + xerD MCAODC_15355 0.23 +0.8 60,600 - xerD MCAODC_15355 0.23 -0.6 60,620 + xerD MCAODC_15355 0.25 +0.4 60,620 + xerD MCAODC_15355 0.25 -0.6 60,620 + xerD MCAODC_15355 0.25 +0.9 60,620 + xerD MCAODC_15355 0.25 -1.1 60,620 + xerD MCAODC_15355 0.25 -0.9 60,621 - xerD MCAODC_15355 0.26 +0.2 60,621 - xerD MCAODC_15355 0.26 -1.7 60,621 - xerD MCAODC_15355 0.26 -1.1 60,657 - xerD MCAODC_15355 0.30 -0.3 60,799 + xerD MCAODC_15355 0.50 +1.9 60,799 + xerD MCAODC_15355 0.50 +2.9 60,799 + xerD MCAODC_15355 0.50 +0.0 60,800 - xerD MCAODC_15355 0.50 -0.8 60,800 - xerD MCAODC_15355 0.50 -0.4 60,800 - xerD MCAODC_15355 0.50 -0.7 60,800 - xerD MCAODC_15355 0.50 +1.8 60,800 - xerD MCAODC_15355 0.50 +2.2 60,800 - xerD MCAODC_15355 0.50 -0.0 60,804 + xerD MCAODC_15355 0.50 +0.1 60,804 + xerD MCAODC_15355 0.50 +1.2 60,804 + xerD MCAODC_15355 0.50 +0.8 60,804 + xerD MCAODC_15355 0.50 +1.2 60,804 + xerD MCAODC_15355 0.50 -1.1 60,805 - xerD MCAODC_15355 0.50 -0.2 60,805 - xerD MCAODC_15355 0.50 -0.0 60,805 - xerD MCAODC_15355 0.50 -1.0 60,805 - xerD MCAODC_15355 0.50 +0.2 60,934 + xerD MCAODC_15355 0.68 -0.3 60,978 + xerD MCAODC_15355 0.74 -0.9 60,978 + xerD MCAODC_15355 0.74 +0.0 60,978 + xerD MCAODC_15355 0.74 -0.1 60,978 + xerD MCAODC_15355 0.74 +1.3 60,978 + xerD MCAODC_15355 0.74 -2.2 60,978 + xerD MCAODC_15355 0.74 +2.5 60,978 + xerD MCAODC_15355 0.74 +1.2 60,978 + xerD MCAODC_15355 0.74 -0.1 60,978 + xerD MCAODC_15355 0.74 -0.6 60,978 + xerD MCAODC_15355 0.74 +0.5 60,978 + xerD MCAODC_15355 0.74 -2.1 60,978 + xerD MCAODC_15355 0.74 -0.4 60,978 + xerD MCAODC_15355 0.74 +0.1 60,978 + xerD MCAODC_15355 0.74 -1.2 60,978 + xerD MCAODC_15355 0.74 +1.2 60,978 + xerD MCAODC_15355 0.74 +0.1 60,978 + xerD MCAODC_15355 0.74 -0.1 60,978 + xerD MCAODC_15355 0.74 +0.4 60,978 + xerD MCAODC_15355 0.74 +1.7 60,978 + xerD MCAODC_15355 0.74 -1.2 60,978 + xerD MCAODC_15355 0.74 -0.1 60,979 - xerD MCAODC_15355 0.74 +0.1 60,979 - xerD MCAODC_15355 0.74 +0.2 60,979 - xerD MCAODC_15355 0.74 +0.7 60,979 - xerD MCAODC_15355 0.74 +0.0 60,979 - xerD MCAODC_15355 0.74 -0.1 60,979 - xerD MCAODC_15355 0.74 -0.2 60,979 - xerD MCAODC_15355 0.74 +0.7 60,979 - xerD MCAODC_15355 0.74 -2.2 60,979 - xerD MCAODC_15355 0.74 +1.2 60,979 - xerD MCAODC_15355 0.74 -1.0 60,979 - xerD MCAODC_15355 0.74 -1.0 60,979 - xerD MCAODC_15355 0.74 -2.7 60,979 - xerD MCAODC_15355 0.74 -0.6 60,980 + xerD MCAODC_15355 0.74 +0.2 60,980 + xerD MCAODC_15355 0.74 -1.2 60,980 + xerD MCAODC_15355 0.74 -0.6 60,981 - xerD MCAODC_15355 0.74 +1.2 60,981 - xerD MCAODC_15355 0.74 +0.4 60,981 - xerD MCAODC_15355 0.74 +1.7 60,981 - xerD MCAODC_15355 0.74 -2.2 60,981 - xerD MCAODC_15355 0.74 +1.9 60,981 - xerD MCAODC_15355 0.74 +0.8 60,989 + xerD MCAODC_15355 0.75 -0.3 60,989 + xerD MCAODC_15355 0.75 +0.7 60,989 + xerD MCAODC_15355 0.75 +0.1 60,989 + xerD MCAODC_15355 0.75 -0.8 60,989 + xerD MCAODC_15355 0.75 +0.5 60,989 + xerD MCAODC_15355 0.75 +0.8 60,989 + xerD MCAODC_15355 0.75 -1.7 60,989 + xerD MCAODC_15355 0.75 -0.0 60,990 - xerD MCAODC_15355 0.75 +0.0 60,990 - xerD MCAODC_15355 0.75 -0.0 60,990 - xerD MCAODC_15355 0.75 -0.1 60,990 - xerD MCAODC_15355 0.75 +0.5 60,990 - xerD MCAODC_15355 0.75 +0.1 61,065 + xerD MCAODC_15355 0.85 +1.3 61,065 + xerD MCAODC_15355 0.85 -0.8 61,065 + xerD MCAODC_15355 0.85 +2.7 61,066 - xerD MCAODC_15355 0.86 +1.1 61,066 - xerD MCAODC_15355 0.86 -0.8 61,067 + xerD MCAODC_15355 0.86 -0.9 61,067 + xerD MCAODC_15355 0.86 -0.1 61,151 + +1.2 61,151 + +0.7 61,178 + +0.6 61,179 - +0.5 61,190 + +3.8 61,190 + -0.5 61,190 + -0.8 61,191 - +0.8 61,191 - -1.9 61,194 + -1.4 61,195 - +0.9 61,195 - +0.3 61,195 - -0.5 61,219 + +0.5 61,220 - -1.4 61,225 - +1.5 61,238 + +1.0 61,238 + +4.2 61,242 + -0.5 61,243 - +0.8 61,243 - +2.0 61,257 - -0.2 61,268 + +1.5 61,268 + -1.5 61,268 + -0.5 61,268 + -1.6 61,315 - MCAODC_15360 0.44 +1.2 61,342 - MCAODC_15360 0.67 +1.7 61,369 + MCAODC_15360 0.89 -2.0 61,409 + +2.7 61,409 + +0.2 61,409 + +1.6 61,409 + -0.6 61,410 - -1.5 61,410 - +0.6 61,410 - +1.7 61,410 - -0.3 61,410 - +0.4 61,445 + -1.1 61,445 + +1.2 61,445 + -1.6 61,582 + repA MCAODC_15365 0.13 -2.7 61,583 - repA MCAODC_15365 0.13 +0.6 61,583 - repA MCAODC_15365 0.13 -0.9 61,666 - repA MCAODC_15365 0.21 -0.8 61,674 + repA MCAODC_15365 0.22 -1.5 61,674 + repA MCAODC_15365 0.22 +2.2 61,674 + repA MCAODC_15365 0.22 +0.2 61,805 + repA MCAODC_15365 0.36 +1.4 61,805 + repA MCAODC_15365 0.36 -1.6 61,805 + repA MCAODC_15365 0.36 +0.5 61,806 - repA MCAODC_15365 0.36 +3.0 61,815 + repA MCAODC_15365 0.37 +0.5 61,815 + repA MCAODC_15365 0.37 -0.2 61,815 + repA MCAODC_15365 0.37 -0.2 61,816 - repA MCAODC_15365 0.37 +0.5 61,852 + repA MCAODC_15365 0.40 -0.1 61,852 + repA MCAODC_15365 0.40 -0.1 61,853 - repA MCAODC_15365 0.40 -1.0 61,893 + repA MCAODC_15365 0.45 -1.7 61,894 - repA MCAODC_15365 0.45 -0.1 61,922 + repA MCAODC_15365 0.48 +0.2 61,923 - repA MCAODC_15365 0.48 -0.4 61,951 - repA MCAODC_15365 0.51 -0.3 61,953 + repA MCAODC_15365 0.51 +2.3 61,953 + repA MCAODC_15365 0.51 -0.1 61,954 - repA MCAODC_15365 0.51 -0.6 61,980 + repA MCAODC_15365 0.53 -1.3 61,981 - repA MCAODC_15365 0.54 +0.2 62,093 + repA MCAODC_15365 0.65 +1.5 62,096 - repA MCAODC_15365 0.65 +0.3 62,148 - repA MCAODC_15365 0.71 -0.3 62,148 - repA MCAODC_15365 0.71 -1.0 62,293 + repA MCAODC_15365 0.85 +1.4 62,294 - repA MCAODC_15365 0.86 -0.7 62,379 - +0.0 62,379 - +1.2
Or see this region's nucleotide sequence