Strain Fitness in Escherichia coli ECRC101 around MCAODC_12540

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmaeB and eutS are separated by 292 nucleotideseutS and eutP are separated by 12 nucleotideseutP and eutQ overlap by 26 nucleotides MCAODC_12535: maeB - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 2,490,464 to 2,492,743 maeB MCAODC_12540: eutS - Bacterial microcompartment shell protein EutS, at 2,493,036 to 2,493,371 eutS MCAODC_12545: eutP - ethanolamine utilization acetate kinase EutP, at 2,493,384 to 2,493,863 eutP MCAODC_12550: eutQ - ethanolamine utilization acetate kinase EutQ, at 2,493,838 to 2,494,539 eutQ Position (kb) 2493 2494Strain fitness (log2 ratio) -2 -1 0 1 2at 2492.141 kb on + strand, within maeBat 2492.141 kb on + strand, within maeBat 2492.245 kb on + strand, within maeBat 2492.258 kb on + strand, within maeBat 2492.258 kb on + strand, within maeBat 2492.258 kb on + strand, within maeBat 2492.258 kb on + strand, within maeBat 2492.259 kb on - strand, within maeBat 2492.259 kb on - strand, within maeBat 2492.259 kb on - strand, within maeBat 2492.509 kb on + strand, within maeBat 2492.510 kb on - strand, within maeBat 2492.542 kb on + strandat 2492.543 kb on - strandat 2492.579 kb on - strandat 2492.582 kb on + strandat 2492.590 kb on - strandat 2492.741 kb on + strandat 2492.784 kb on - strandat 2492.804 kb on - strandat 2492.807 kb on - strandat 2492.851 kb on + strandat 2492.921 kb on + strandat 2492.979 kb on - strandat 2493.164 kb on + strand, within eutSat 2493.165 kb on - strand, within eutSat 2493.344 kb on + strandat 2493.372 kb on + strandat 2493.456 kb on + strand, within eutPat 2493.456 kb on + strand, within eutPat 2493.457 kb on - strand, within eutPat 2493.506 kb on + strand, within eutPat 2493.525 kb on + strand, within eutPat 2493.526 kb on - strand, within eutPat 2493.591 kb on + strand, within eutPat 2493.592 kb on - strand, within eutPat 2493.680 kb on + strand, within eutPat 2493.724 kb on + strand, within eutPat 2493.763 kb on + strand, within eutPat 2493.763 kb on + strand, within eutPat 2493.924 kb on + strand, within eutQat 2493.924 kb on + strand, within eutQat 2493.924 kb on + strand, within eutQat 2493.925 kb on - strand, within eutQat 2493.966 kb on + strand, within eutQat 2494.219 kb on - strand, within eutQat 2494.320 kb on + strand, within eutQat 2494.321 kb on - strand, within eutQat 2494.321 kb on - strand, within eutQat 2494.321 kb on - strand, within eutQat 2494.360 kb on + strand, within eutQat 2494.361 kb on - strand, within eutQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,492,141 + maeB MCAODC_12535 0.74 -0.3
2,492,141 + maeB MCAODC_12535 0.74 +1.2
2,492,245 + maeB MCAODC_12535 0.78 +0.8
2,492,258 + maeB MCAODC_12535 0.79 +0.5
2,492,258 + maeB MCAODC_12535 0.79 -0.0
2,492,258 + maeB MCAODC_12535 0.79 +0.3
2,492,258 + maeB MCAODC_12535 0.79 +0.5
2,492,259 - maeB MCAODC_12535 0.79 -1.5
2,492,259 - maeB MCAODC_12535 0.79 +0.5
2,492,259 - maeB MCAODC_12535 0.79 -1.1
2,492,509 + maeB MCAODC_12535 0.90 -0.3
2,492,510 - maeB MCAODC_12535 0.90 +0.7
2,492,542 + -0.9
2,492,543 - +1.1
2,492,579 - -0.1
2,492,582 + -1.5
2,492,590 - -0.1
2,492,741 + -1.1
2,492,784 - +0.6
2,492,804 - -1.4
2,492,807 - +2.5
2,492,851 + -0.2
2,492,921 + +0.1
2,492,979 - -0.2
2,493,164 + eutS MCAODC_12540 0.38 -1.4
2,493,165 - eutS MCAODC_12540 0.38 -2.2
2,493,344 + -0.2
2,493,372 + +0.6
2,493,456 + eutP MCAODC_12545 0.15 -0.2
2,493,456 + eutP MCAODC_12545 0.15 -0.7
2,493,457 - eutP MCAODC_12545 0.15 +0.2
2,493,506 + eutP MCAODC_12545 0.25 -0.4
2,493,525 + eutP MCAODC_12545 0.29 +1.5
2,493,526 - eutP MCAODC_12545 0.30 +1.2
2,493,591 + eutP MCAODC_12545 0.43 +0.1
2,493,592 - eutP MCAODC_12545 0.43 -2.2
2,493,680 + eutP MCAODC_12545 0.62 -0.4
2,493,724 + eutP MCAODC_12545 0.71 +0.6
2,493,763 + eutP MCAODC_12545 0.79 -0.1
2,493,763 + eutP MCAODC_12545 0.79 -0.2
2,493,924 + eutQ MCAODC_12550 0.12 -1.5
2,493,924 + eutQ MCAODC_12550 0.12 -0.2
2,493,924 + eutQ MCAODC_12550 0.12 +0.1
2,493,925 - eutQ MCAODC_12550 0.12 -1.0
2,493,966 + eutQ MCAODC_12550 0.18 -0.9
2,494,219 - eutQ MCAODC_12550 0.54 -0.6
2,494,320 + eutQ MCAODC_12550 0.69 +0.6
2,494,321 - eutQ MCAODC_12550 0.69 +1.5
2,494,321 - eutQ MCAODC_12550 0.69 -1.6
2,494,321 - eutQ MCAODC_12550 0.69 +0.2
2,494,360 + eutQ MCAODC_12550 0.74 -0.5
2,494,361 - eutQ MCAODC_12550 0.75 -0.2

Or see this region's nucleotide sequence