Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt maeB and eutS are separated by 292 nucleotides eutS and eutP are separated by 12 nucleotides eutP and eutQ overlap by 26 nucleotides
MCAODC_12535: maeB - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 2,490,464 to 2,492,743
maeB
MCAODC_12540: eutS - Bacterial microcompartment shell protein EutS, at 2,493,036 to 2,493,371
eutS
MCAODC_12545: eutP - ethanolamine utilization acetate kinase EutP, at 2,493,384 to 2,493,863
eutP
MCAODC_12550: eutQ - ethanolamine utilization acetate kinase EutQ, at 2,493,838 to 2,494,539
eutQ
Position (kb)
2493
2494 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2492.141 kb on + strand, within maeB at 2492.141 kb on + strand, within maeB at 2492.245 kb on + strand, within maeB at 2492.258 kb on + strand, within maeB at 2492.258 kb on + strand, within maeB at 2492.258 kb on + strand, within maeB at 2492.258 kb on + strand, within maeB at 2492.259 kb on - strand, within maeB at 2492.259 kb on - strand, within maeB at 2492.259 kb on - strand, within maeB at 2492.509 kb on + strand, within maeB at 2492.510 kb on - strand, within maeB at 2492.542 kb on + strand at 2492.543 kb on - strand at 2492.579 kb on - strand at 2492.582 kb on + strand at 2492.590 kb on - strand at 2492.741 kb on + strand at 2492.784 kb on - strand at 2492.804 kb on - strand at 2492.807 kb on - strand at 2492.851 kb on + strand at 2492.921 kb on + strand at 2492.979 kb on - strand at 2493.164 kb on + strand, within eutS at 2493.165 kb on - strand, within eutS at 2493.344 kb on + strand at 2493.372 kb on + strand at 2493.456 kb on + strand, within eutP at 2493.456 kb on + strand, within eutP at 2493.457 kb on - strand, within eutP at 2493.506 kb on + strand, within eutP at 2493.525 kb on + strand, within eutP at 2493.526 kb on - strand, within eutP at 2493.591 kb on + strand, within eutP at 2493.592 kb on - strand, within eutP at 2493.680 kb on + strand, within eutP at 2493.724 kb on + strand, within eutP at 2493.763 kb on + strand, within eutP at 2493.763 kb on + strand, within eutP at 2493.924 kb on + strand, within eutQ at 2493.924 kb on + strand, within eutQ at 2493.924 kb on + strand, within eutQ at 2493.925 kb on - strand, within eutQ at 2493.966 kb on + strand, within eutQ at 2494.219 kb on - strand, within eutQ at 2494.320 kb on + strand, within eutQ at 2494.321 kb on - strand, within eutQ at 2494.321 kb on - strand, within eutQ at 2494.321 kb on - strand, within eutQ at 2494.360 kb on + strand, within eutQ at 2494.361 kb on - strand, within eutQ
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 2,492,141 + maeB MCAODC_12535 0.74 -0.3 2,492,141 + maeB MCAODC_12535 0.74 +1.2 2,492,245 + maeB MCAODC_12535 0.78 +0.8 2,492,258 + maeB MCAODC_12535 0.79 +0.5 2,492,258 + maeB MCAODC_12535 0.79 -0.0 2,492,258 + maeB MCAODC_12535 0.79 +0.3 2,492,258 + maeB MCAODC_12535 0.79 +0.5 2,492,259 - maeB MCAODC_12535 0.79 -1.5 2,492,259 - maeB MCAODC_12535 0.79 +0.5 2,492,259 - maeB MCAODC_12535 0.79 -1.1 2,492,509 + maeB MCAODC_12535 0.90 -0.3 2,492,510 - maeB MCAODC_12535 0.90 +0.7 2,492,542 + -0.9 2,492,543 - +1.1 2,492,579 - -0.1 2,492,582 + -1.5 2,492,590 - -0.1 2,492,741 + -1.1 2,492,784 - +0.6 2,492,804 - -1.4 2,492,807 - +2.5 2,492,851 + -0.2 2,492,921 + +0.1 2,492,979 - -0.2 2,493,164 + eutS MCAODC_12540 0.38 -1.4 2,493,165 - eutS MCAODC_12540 0.38 -2.2 2,493,344 + -0.2 2,493,372 + +0.6 2,493,456 + eutP MCAODC_12545 0.15 -0.2 2,493,456 + eutP MCAODC_12545 0.15 -0.7 2,493,457 - eutP MCAODC_12545 0.15 +0.2 2,493,506 + eutP MCAODC_12545 0.25 -0.4 2,493,525 + eutP MCAODC_12545 0.29 +1.5 2,493,526 - eutP MCAODC_12545 0.30 +1.2 2,493,591 + eutP MCAODC_12545 0.43 +0.1 2,493,592 - eutP MCAODC_12545 0.43 -2.2 2,493,680 + eutP MCAODC_12545 0.62 -0.4 2,493,724 + eutP MCAODC_12545 0.71 +0.6 2,493,763 + eutP MCAODC_12545 0.79 -0.1 2,493,763 + eutP MCAODC_12545 0.79 -0.2 2,493,924 + eutQ MCAODC_12550 0.12 -1.5 2,493,924 + eutQ MCAODC_12550 0.12 -0.2 2,493,924 + eutQ MCAODC_12550 0.12 +0.1 2,493,925 - eutQ MCAODC_12550 0.12 -1.0 2,493,966 + eutQ MCAODC_12550 0.18 -0.9 2,494,219 - eutQ MCAODC_12550 0.54 -0.6 2,494,320 + eutQ MCAODC_12550 0.69 +0.6 2,494,321 - eutQ MCAODC_12550 0.69 +1.5 2,494,321 - eutQ MCAODC_12550 0.69 -1.6 2,494,321 - eutQ MCAODC_12550 0.69 +0.2 2,494,360 + eutQ MCAODC_12550 0.74 -0.5 2,494,361 - eutQ MCAODC_12550 0.75 -0.2
Or see this region's nucleotide sequence