Strain Fitness in Escherichia coli ECRC101 around MCAODC_08595

Experiment: Control_ECRC101_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglmM and secG are separated by 227 nucleotidessecG and Leu_trna are separated by 14 nucleotidesLeu_trna and yhbX are separated by 566 nucleotides MCAODC_08590: glmM - phosphoglucosamine mutase, at 1,719,627 to 1,720,964 glmM MCAODC_08595: secG - preprotein translocase subunit SecG, at 1,721,192 to 1,721,524 secG MCAODC_08600: Leu_trna - tRNA-Leu(gag), at 1,721,539 to 1,721,625 _trna MCAODC_08605: yhbX - Putative transferase YhbX, at 1,722,192 to 1,723,709 yhbX Position (kb) 1721 1722Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1720.951 kb on + strandat 1720.951 kb on + strandat 1720.951 kb on + strandat 1720.951 kb on + strandat 1720.962 kb on + strandat 1720.963 kb on - strandat 1720.970 kb on + strandat 1720.971 kb on - strandat 1720.974 kb on + strandat 1721.129 kb on + strandat 1721.142 kb on + strandat 1721.191 kb on + strandat 1721.191 kb on + strandat 1721.195 kb on + strandat 1721.256 kb on + strand, within secGat 1721.696 kb on + strandat 1721.697 kb on - strandat 1721.702 kb on + strandat 1721.703 kb on - strandat 1721.703 kb on - strandat 1721.727 kb on - strandat 1721.733 kb on + strandat 1721.766 kb on + strandat 1721.769 kb on - strandat 1721.791 kb on + strandat 1721.792 kb on - strandat 1721.792 kb on - strandat 1721.803 kb on + strandat 1721.803 kb on + strandat 1721.803 kb on + strandat 1721.879 kb on - strandat 1721.882 kb on + strandat 1721.883 kb on - strandat 1722.141 kb on - strandat 1722.147 kb on - strandat 1722.192 kb on - strandat 1722.242 kb on + strandat 1722.242 kb on + strandat 1722.242 kb on + strandat 1722.242 kb on + strandat 1722.243 kb on - strandat 1722.243 kb on - strandat 1722.245 kb on - strandat 1722.289 kb on + strandat 1722.311 kb on + strandat 1722.311 kb on + strandat 1722.312 kb on - strandat 1722.312 kb on - strandat 1722.312 kb on - strandat 1722.312 kb on - strandat 1722.312 kb on - strandat 1722.314 kb on + strandat 1722.315 kb on - strandat 1722.315 kb on - strandat 1722.321 kb on + strandat 1722.321 kb on + strandat 1722.322 kb on - strandat 1722.333 kb on - strandat 1722.369 kb on - strand, within yhbXat 1722.418 kb on - strand, within yhbXat 1722.426 kb on + strand, within yhbXat 1722.427 kb on - strand, within yhbXat 1722.427 kb on - strand, within yhbXat 1722.430 kb on + strand, within yhbXat 1722.431 kb on - strand, within yhbXat 1722.449 kb on - strand, within yhbXat 1722.470 kb on - strand, within yhbXat 1722.480 kb on + strand, within yhbXat 1722.481 kb on - strand, within yhbX

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
remove
1,720,951 + -0.4
1,720,951 + -1.2
1,720,951 + +0.5
1,720,951 + +0.3
1,720,962 + -2.2
1,720,963 - +0.1
1,720,970 + +0.0
1,720,971 - -0.6
1,720,974 + -0.8
1,721,129 + -1.0
1,721,142 + +1.2
1,721,191 + +0.0
1,721,191 + +2.8
1,721,195 + +0.5
1,721,256 + secG MCAODC_08595 0.19 -1.7
1,721,696 + +2.2
1,721,697 - -0.9
1,721,702 + +0.2
1,721,703 - -0.1
1,721,703 - -0.8
1,721,727 - -0.1
1,721,733 + +1.2
1,721,766 + -1.0
1,721,769 - -0.9
1,721,791 + -1.6
1,721,792 - +1.2
1,721,792 - +0.4
1,721,803 + +1.3
1,721,803 + +0.6
1,721,803 + -0.1
1,721,879 - +0.2
1,721,882 + -1.5
1,721,883 - -2.0
1,722,141 - +0.0
1,722,147 - -0.1
1,722,192 - +0.2
1,722,242 + +0.1
1,722,242 + +1.4
1,722,242 + -0.1
1,722,242 + -0.9
1,722,243 - +0.2
1,722,243 - -0.8
1,722,245 - -0.6
1,722,289 + -0.3
1,722,311 + +0.5
1,722,311 + +0.2
1,722,312 - +0.3
1,722,312 - +1.9
1,722,312 - +0.9
1,722,312 - +0.6
1,722,312 - -1.0
1,722,314 + -0.3
1,722,315 - +0.8
1,722,315 - -1.7
1,722,321 + -0.5
1,722,321 + +0.3
1,722,322 - -0.3
1,722,333 - +1.4
1,722,369 - yhbX MCAODC_08605 0.12 +0.3
1,722,418 - yhbX MCAODC_08605 0.15 +0.1
1,722,426 + yhbX MCAODC_08605 0.15 -0.8
1,722,427 - yhbX MCAODC_08605 0.15 -0.6
1,722,427 - yhbX MCAODC_08605 0.15 -0.2
1,722,430 + yhbX MCAODC_08605 0.16 -1.2
1,722,431 - yhbX MCAODC_08605 0.16 -4.0
1,722,449 - yhbX MCAODC_08605 0.17 -0.3
1,722,470 - yhbX MCAODC_08605 0.18 -0.3
1,722,480 + yhbX MCAODC_08605 0.19 +0.0
1,722,481 - yhbX MCAODC_08605 0.19 +0.8

Or see this region's nucleotide sequence