Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnA and glnL are separated by 173 nucleotides glnL and glnG are separated by 11 nucleotides
MCAODC_04600: glnA - glutamate--ammonia ligase, at 932,317 to 933,726
glnA
MCAODC_04605: glnL - nitrogen regulation protein NR(II), at 933,900 to 934,949
glnL
MCAODC_04610: glnG - nitrogen regulation protein NR(I), at 934,961 to 936,370
glnG
Position (kb) 933
934
935 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 932.957 kb on + strand, within glnA at 933.037 kb on + strand, within glnA at 933.037 kb on + strand, within glnA at 933.038 kb on - strand, within glnA at 933.038 kb on - strand, within glnA at 933.178 kb on + strand, within glnA at 933.178 kb on + strand, within glnA at 933.208 kb on + strand, within glnA at 933.209 kb on - strand, within glnA at 933.319 kb on + strand, within glnA at 933.319 kb on + strand, within glnA at 933.351 kb on + strand, within glnA at 933.509 kb on - strand, within glnA at 933.643 kb on + strand at 933.715 kb on + strand at 933.715 kb on + strand at 933.727 kb on + strand at 933.727 kb on + strand at 933.728 kb on - strand at 933.728 kb on - strand at 933.728 kb on - strand at 933.740 kb on - strand at 933.740 kb on - strand at 933.767 kb on + strand at 933.767 kb on + strand at 933.844 kb on - strand at 933.858 kb on - strand at 933.956 kb on + strand at 933.956 kb on + strand at 933.956 kb on + strand at 934.071 kb on + strand, within glnL at 934.071 kb on + strand, within glnL at 934.072 kb on - strand, within glnL at 934.072 kb on - strand, within glnL at 934.081 kb on + strand, within glnL at 934.081 kb on + strand, within glnL at 934.081 kb on + strand, within glnL at 934.082 kb on - strand, within glnL at 934.082 kb on - strand, within glnL at 934.085 kb on + strand, within glnL at 934.193 kb on + strand, within glnL at 934.250 kb on - strand, within glnL at 934.265 kb on - strand, within glnL at 934.323 kb on - strand, within glnL at 934.323 kb on - strand, within glnL at 934.342 kb on + strand, within glnL at 934.361 kb on - strand, within glnL at 934.361 kb on - strand, within glnL at 934.398 kb on + strand, within glnL at 934.398 kb on + strand, within glnL at 934.398 kb on + strand, within glnL at 934.399 kb on - strand, within glnL at 934.400 kb on + strand, within glnL at 934.631 kb on + strand, within glnL at 934.632 kb on - strand, within glnL at 934.714 kb on + strand, within glnL at 934.714 kb on + strand, within glnL at 934.760 kb on + strand, within glnL at 934.846 kb on + strand at 934.859 kb on + strand at 934.895 kb on + strand at 934.895 kb on + strand at 934.896 kb on - strand at 934.930 kb on - strand at 934.947 kb on + strand at 934.947 kb on + strand at 934.948 kb on - strand at 934.948 kb on - strand at 934.975 kb on - strand at 934.996 kb on + strand at 934.996 kb on + strand at 934.996 kb on + strand at 934.997 kb on - strand at 934.997 kb on - strand at 935.043 kb on + strand at 935.050 kb on + strand at 935.050 kb on + strand at 935.051 kb on - strand at 935.128 kb on + strand, within glnG at 935.129 kb on - strand, within glnG at 935.200 kb on + strand, within glnG at 935.200 kb on + strand, within glnG at 935.240 kb on + strand, within glnG at 935.261 kb on + strand, within glnG at 935.261 kb on + strand, within glnG at 935.324 kb on + strand, within glnG at 935.416 kb on + strand, within glnG at 935.417 kb on - strand, within glnG at 935.417 kb on - strand, within glnG at 935.419 kb on + strand, within glnG at 935.443 kb on + strand, within glnG at 935.443 kb on + strand, within glnG at 935.446 kb on + strand, within glnG at 935.536 kb on + strand, within glnG at 935.623 kb on + strand, within glnG at 935.624 kb on - strand, within glnG at 935.662 kb on + strand, within glnG at 935.663 kb on - strand, within glnG at 935.663 kb on - strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.668 kb on - strand, within glnG at 935.668 kb on - strand, within glnG at 935.833 kb on + strand, within glnG at 935.834 kb on - strand, within glnG at 935.834 kb on - strand, within glnG at 935.834 kb on - strand, within glnG at 935.911 kb on + strand, within glnG at 935.911 kb on + strand, within glnG at 935.912 kb on - strand, within glnG
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 932,957 + glnA MCAODC_04600 0.45 -0.4 933,037 + glnA MCAODC_04600 0.51 +1.1 933,037 + glnA MCAODC_04600 0.51 +1.6 933,038 - glnA MCAODC_04600 0.51 +0.8 933,038 - glnA MCAODC_04600 0.51 -0.4 933,178 + glnA MCAODC_04600 0.61 -2.3 933,178 + glnA MCAODC_04600 0.61 -0.8 933,208 + glnA MCAODC_04600 0.63 -0.2 933,209 - glnA MCAODC_04600 0.63 +1.9 933,319 + glnA MCAODC_04600 0.71 -1.1 933,319 + glnA MCAODC_04600 0.71 +1.3 933,351 + glnA MCAODC_04600 0.73 -1.3 933,509 - glnA MCAODC_04600 0.85 -1.3 933,643 + -0.2 933,715 + +1.1 933,715 + -0.4 933,727 + -0.4 933,727 + -1.2 933,728 - -0.4 933,728 - +1.2 933,728 - -0.4 933,740 - -2.4 933,740 - -0.4 933,767 + -0.7 933,767 + -1.7 933,844 - +0.3 933,858 - -0.8 933,956 + -1.3 933,956 + +0.6 933,956 + -1.2 934,071 + glnL MCAODC_04605 0.16 -0.7 934,071 + glnL MCAODC_04605 0.16 +1.8 934,072 - glnL MCAODC_04605 0.16 -0.6 934,072 - glnL MCAODC_04605 0.16 -1.5 934,081 + glnL MCAODC_04605 0.17 -2.2 934,081 + glnL MCAODC_04605 0.17 -1.3 934,081 + glnL MCAODC_04605 0.17 -0.3 934,082 - glnL MCAODC_04605 0.17 -2.6 934,082 - glnL MCAODC_04605 0.17 -2.4 934,085 + glnL MCAODC_04605 0.18 +1.1 934,193 + glnL MCAODC_04605 0.28 +1.0 934,250 - glnL MCAODC_04605 0.33 -3.2 934,265 - glnL MCAODC_04605 0.35 -2.7 934,323 - glnL MCAODC_04605 0.40 -2.9 934,323 - glnL MCAODC_04605 0.40 -0.5 934,342 + glnL MCAODC_04605 0.42 -1.2 934,361 - glnL MCAODC_04605 0.44 -0.5 934,361 - glnL MCAODC_04605 0.44 -1.2 934,398 + glnL MCAODC_04605 0.47 +3.9 934,398 + glnL MCAODC_04605 0.47 -1.3 934,398 + glnL MCAODC_04605 0.47 +1.2 934,399 - glnL MCAODC_04605 0.48 -3.1 934,400 + glnL MCAODC_04605 0.48 -1.5 934,631 + glnL MCAODC_04605 0.70 +1.2 934,632 - glnL MCAODC_04605 0.70 -0.4 934,714 + glnL MCAODC_04605 0.78 +2.2 934,714 + glnL MCAODC_04605 0.78 -2.9 934,760 + glnL MCAODC_04605 0.82 -1.8 934,846 + -0.6 934,859 + -0.3 934,895 + -2.2 934,895 + -0.9 934,896 - +0.6 934,930 - -2.3 934,947 + -1.6 934,947 + +0.0 934,948 - -0.7 934,948 - -2.0 934,975 - -1.8 934,996 + -3.5 934,996 + -2.6 934,996 + -0.4 934,997 - -1.3 934,997 - +0.0 935,043 + -0.3 935,050 + -1.5 935,050 + -0.7 935,051 - -2.7 935,128 + glnG MCAODC_04610 0.12 -2.9 935,129 - glnG MCAODC_04610 0.12 -0.9 935,200 + glnG MCAODC_04610 0.17 -1.6 935,200 + glnG MCAODC_04610 0.17 -0.8 935,240 + glnG MCAODC_04610 0.20 -1.8 935,261 + glnG MCAODC_04610 0.21 -1.2 935,261 + glnG MCAODC_04610 0.21 -0.2 935,324 + glnG MCAODC_04610 0.26 -1.1 935,416 + glnG MCAODC_04610 0.32 -4.1 935,417 - glnG MCAODC_04610 0.32 -0.5 935,417 - glnG MCAODC_04610 0.32 +0.1 935,419 + glnG MCAODC_04610 0.32 -2.2 935,443 + glnG MCAODC_04610 0.34 -2.0 935,443 + glnG MCAODC_04610 0.34 -0.7 935,446 + glnG MCAODC_04610 0.34 -1.8 935,536 + glnG MCAODC_04610 0.41 -1.7 935,623 + glnG MCAODC_04610 0.47 -2.2 935,624 - glnG MCAODC_04610 0.47 -0.9 935,662 + glnG MCAODC_04610 0.50 -1.6 935,663 - glnG MCAODC_04610 0.50 -1.7 935,663 - glnG MCAODC_04610 0.50 -2.1 935,667 + glnG MCAODC_04610 0.50 -3.3 935,667 + glnG MCAODC_04610 0.50 -2.5 935,667 + glnG MCAODC_04610 0.50 -1.5 935,667 + glnG MCAODC_04610 0.50 -2.2 935,667 + glnG MCAODC_04610 0.50 -0.8 935,667 + glnG MCAODC_04610 0.50 -1.9 935,667 + glnG MCAODC_04610 0.50 -1.2 935,668 - glnG MCAODC_04610 0.50 -1.5 935,668 - glnG MCAODC_04610 0.50 -1.8 935,833 + glnG MCAODC_04610 0.62 -1.4 935,834 - glnG MCAODC_04610 0.62 +1.1 935,834 - glnG MCAODC_04610 0.62 -2.0 935,834 - glnG MCAODC_04610 0.62 -2.8 935,911 + glnG MCAODC_04610 0.67 -2.9 935,911 + glnG MCAODC_04610 0.67 -3.1 935,912 - glnG MCAODC_04610 0.67 +0.9
Or see this region's nucleotide sequence