Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuB and leuC1 are separated by 2 nucleotides leuC1 and leuD are separated by 10 nucleotides leuD and sgrR are separated by 327 nucleotides
MCAODC_01235: leuB - 3-isopropylmalate dehydrogenase, at 230,645 to 231,736
leuB
MCAODC_01240: leuC1 - 3-isopropylmalate dehydratase large subunit 1, at 231,739 to 233,139
leuC1
MCAODC_01245: leuD - 3-isopropylmalate dehydratase small subunit, at 233,150 to 233,755
leuD
MCAODC_01255: sgrR - DNA-binding transcriptional regulator SgrR, at 234,083 to 235,741
sgrR
Position (kb) 231
232
233
234 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 230.771 kb on + strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.779 kb on - strand, within leuB at 230.895 kb on + strand, within leuB at 230.896 kb on - strand, within leuB at 230.955 kb on + strand, within leuB at 231.077 kb on + strand, within leuB at 231.078 kb on - strand, within leuB at 231.078 kb on - strand, within leuB at 231.116 kb on + strand, within leuB at 231.117 kb on - strand, within leuB at 231.117 kb on - strand, within leuB at 231.144 kb on - strand, within leuB at 231.144 kb on - strand, within leuB at 231.144 kb on - strand, within leuB at 231.166 kb on + strand, within leuB at 231.166 kb on + strand, within leuB at 231.166 kb on + strand, within leuB at 231.167 kb on - strand, within leuB at 231.167 kb on - strand, within leuB at 231.196 kb on + strand, within leuB at 231.209 kb on - strand, within leuB at 231.256 kb on - strand, within leuB at 231.313 kb on + strand, within leuB at 231.313 kb on + strand, within leuB at 231.314 kb on - strand, within leuB at 231.314 kb on - strand, within leuB at 231.317 kb on + strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.318 kb on - strand, within leuB at 231.346 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.482 kb on + strand, within leuB at 231.483 kb on - strand, within leuB at 231.483 kb on - strand, within leuB at 231.521 kb on - strand, within leuB at 231.634 kb on - strand at 231.660 kb on + strand at 231.685 kb on + strand at 231.685 kb on + strand at 231.685 kb on + strand at 231.716 kb on + strand at 231.717 kb on - strand at 231.717 kb on - strand at 231.717 kb on - strand at 231.734 kb on + strand at 231.734 kb on + strand at 231.734 kb on + strand at 231.734 kb on + strand at 231.735 kb on - strand at 231.735 kb on - strand at 231.735 kb on - strand at 231.735 kb on - strand at 231.745 kb on - strand at 231.755 kb on - strand at 231.779 kb on + strand at 231.779 kb on + strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.780 kb on - strand at 231.784 kb on + strand at 231.785 kb on - strand at 231.812 kb on + strand at 231.812 kb on + strand at 231.812 kb on + strand at 231.812 kb on + strand at 231.813 kb on - strand at 231.813 kb on - strand at 231.813 kb on - strand at 231.813 kb on - strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.815 kb on - strand at 231.815 kb on - strand at 231.816 kb on + strand at 231.816 kb on + strand at 231.816 kb on + strand at 231.816 kb on + strand at 231.817 kb on - strand at 231.817 kb on - strand at 231.817 kb on - strand at 231.817 kb on - strand at 231.819 kb on - strand at 231.936 kb on + strand, within leuC1 at 231.937 kb on - strand, within leuC1 at 232.030 kb on + strand, within leuC1 at 232.049 kb on - strand, within leuC1 at 232.067 kb on + strand, within leuC1 at 232.067 kb on + strand, within leuC1 at 232.068 kb on - strand, within leuC1 at 232.128 kb on + strand, within leuC1 at 232.193 kb on + strand, within leuC1 at 232.193 kb on + strand, within leuC1 at 232.194 kb on - strand, within leuC1 at 232.285 kb on - strand, within leuC1 at 232.299 kb on + strand, within leuC1 at 232.370 kb on + strand, within leuC1 at 232.371 kb on - strand, within leuC1 at 232.402 kb on - strand, within leuC1 at 232.402 kb on - strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.458 kb on + strand, within leuC1 at 232.459 kb on - strand, within leuC1 at 232.459 kb on - strand, within leuC1 at 232.462 kb on + strand, within leuC1 at 232.614 kb on + strand, within leuC1 at 232.647 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.711 kb on + strand, within leuC1 at 232.712 kb on - strand, within leuC1 at 232.712 kb on - strand, within leuC1 at 232.713 kb on + strand, within leuC1 at 232.713 kb on + strand, within leuC1 at 232.714 kb on - strand, within leuC1 at 232.792 kb on - strand, within leuC1 at 232.792 kb on - strand, within leuC1 at 232.792 kb on - strand, within leuC1 at 232.851 kb on - strand, within leuC1 at 232.915 kb on - strand, within leuC1 at 233.029 kb on - strand at 233.133 kb on + strand at 233.133 kb on + strand at 233.134 kb on - strand at 233.137 kb on + strand at 233.137 kb on + strand at 233.138 kb on - strand at 233.351 kb on + strand, within leuD at 233.443 kb on + strand, within leuD at 233.443 kb on + strand, within leuD at 233.443 kb on + strand, within leuD at 233.481 kb on - strand, within leuD at 233.488 kb on + strand, within leuD at 233.488 kb on + strand, within leuD at 233.489 kb on - strand, within leuD at 233.489 kb on - strand, within leuD at 233.521 kb on - strand, within leuD at 233.586 kb on + strand, within leuD at 233.587 kb on - strand, within leuD at 233.628 kb on - strand, within leuD at 233.692 kb on + strand, within leuD at 233.693 kb on - strand, within leuD at 233.747 kb on - strand at 233.747 kb on - strand at 233.753 kb on + strand at 233.754 kb on - strand at 233.760 kb on + strand at 233.805 kb on + strand at 233.805 kb on + strand at 233.806 kb on - strand at 233.828 kb on - strand at 233.836 kb on + strand at 233.836 kb on + strand at 233.837 kb on - strand at 233.914 kb on + strand at 233.972 kb on + strand at 233.972 kb on + strand at 233.973 kb on - strand at 233.973 kb on - strand at 234.019 kb on - strand at 234.019 kb on - strand at 234.025 kb on + strand at 234.033 kb on + strand at 234.033 kb on + strand at 234.034 kb on - strand at 234.036 kb on + strand at 234.036 kb on + strand at 234.039 kb on - strand at 234.039 kb on - strand at 234.139 kb on + strand at 234.139 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 230,771 + leuB MCAODC_01235 0.12 -1.1 230,779 - leuB MCAODC_01235 0.12 -4.5 230,779 - leuB MCAODC_01235 0.12 -0.6 230,779 - leuB MCAODC_01235 0.12 -3.2 230,779 - leuB MCAODC_01235 0.12 -3.6 230,779 - leuB MCAODC_01235 0.12 -0.6 230,779 - leuB MCAODC_01235 0.12 -1.0 230,895 + leuB MCAODC_01235 0.23 -2.9 230,896 - leuB MCAODC_01235 0.23 -1.1 230,955 + leuB MCAODC_01235 0.28 -0.7 231,077 + leuB MCAODC_01235 0.40 -2.2 231,078 - leuB MCAODC_01235 0.40 -3.8 231,078 - leuB MCAODC_01235 0.40 -2.8 231,116 + leuB MCAODC_01235 0.43 -4.4 231,117 - leuB MCAODC_01235 0.43 -2.4 231,117 - leuB MCAODC_01235 0.43 -2.4 231,144 - leuB MCAODC_01235 0.46 -3.8 231,144 - leuB MCAODC_01235 0.46 -3.5 231,144 - leuB MCAODC_01235 0.46 -1.6 231,166 + leuB MCAODC_01235 0.48 -1.3 231,166 + leuB MCAODC_01235 0.48 -2.0 231,166 + leuB MCAODC_01235 0.48 -3.2 231,167 - leuB MCAODC_01235 0.48 +0.5 231,167 - leuB MCAODC_01235 0.48 -2.0 231,196 + leuB MCAODC_01235 0.50 -3.0 231,209 - leuB MCAODC_01235 0.52 -2.6 231,256 - leuB MCAODC_01235 0.56 -0.2 231,313 + leuB MCAODC_01235 0.61 -1.5 231,313 + leuB MCAODC_01235 0.61 -1.0 231,314 - leuB MCAODC_01235 0.61 -3.7 231,314 - leuB MCAODC_01235 0.61 -4.3 231,317 + leuB MCAODC_01235 0.62 -2.2 231,318 - leuB MCAODC_01235 0.62 -2.3 231,318 - leuB MCAODC_01235 0.62 -2.8 231,318 - leuB MCAODC_01235 0.62 -1.8 231,318 - leuB MCAODC_01235 0.62 -3.4 231,318 - leuB MCAODC_01235 0.62 -2.7 231,318 - leuB MCAODC_01235 0.62 -0.7 231,318 - leuB MCAODC_01235 0.62 -3.3 231,318 - leuB MCAODC_01235 0.62 -1.4 231,318 - leuB MCAODC_01235 0.62 -1.6 231,318 - leuB MCAODC_01235 0.62 -4.4 231,318 - leuB MCAODC_01235 0.62 -3.1 231,318 - leuB MCAODC_01235 0.62 -2.9 231,318 - leuB MCAODC_01235 0.62 -1.5 231,346 + leuB MCAODC_01235 0.64 -1.8 231,482 + leuB MCAODC_01235 0.77 -0.0 231,482 + leuB MCAODC_01235 0.77 +0.9 231,482 + leuB MCAODC_01235 0.77 -1.6 231,482 + leuB MCAODC_01235 0.77 -2.0 231,482 + leuB MCAODC_01235 0.77 -1.7 231,482 + leuB MCAODC_01235 0.77 -2.2 231,483 - leuB MCAODC_01235 0.77 -4.8 231,483 - leuB MCAODC_01235 0.77 -3.6 231,521 - leuB MCAODC_01235 0.80 -2.5 231,634 - -2.9 231,660 + -0.8 231,685 + -1.4 231,685 + -3.3 231,685 + -0.4 231,716 + -3.0 231,717 - -1.4 231,717 - +1.7 231,717 - -0.6 231,734 + -1.9 231,734 + +0.5 231,734 + +0.3 231,734 + -1.1 231,735 - -3.3 231,735 - -3.0 231,735 - -2.1 231,735 - -2.7 231,745 - -2.3 231,755 - -0.1 231,779 + -1.4 231,779 + -3.1 231,780 - -1.1 231,780 - -2.0 231,780 - -2.3 231,780 - -1.6 231,780 - -2.9 231,780 - -2.4 231,784 + -2.8 231,785 - -2.0 231,812 + -3.3 231,812 + -2.9 231,812 + -2.6 231,812 + -4.4 231,813 - -1.6 231,813 - -1.4 231,813 - -1.9 231,813 - -3.7 231,814 + -2.7 231,814 + -2.9 231,814 + -2.0 231,814 + -2.3 231,814 + -2.4 231,814 + -4.4 231,814 + -2.8 231,814 + -2.9 231,815 - -1.4 231,815 - -2.2 231,816 + -3.5 231,816 + -1.8 231,816 + -0.8 231,816 + -3.0 231,817 - -2.8 231,817 - -2.0 231,817 - -3.3 231,817 - +0.0 231,819 - -1.3 231,936 + leuC1 MCAODC_01240 0.14 -3.2 231,937 - leuC1 MCAODC_01240 0.14 -4.3 232,030 + leuC1 MCAODC_01240 0.21 -2.6 232,049 - leuC1 MCAODC_01240 0.22 -3.1 232,067 + leuC1 MCAODC_01240 0.23 -2.6 232,067 + leuC1 MCAODC_01240 0.23 -2.1 232,068 - leuC1 MCAODC_01240 0.23 -1.9 232,128 + leuC1 MCAODC_01240 0.28 -2.4 232,193 + leuC1 MCAODC_01240 0.32 -4.7 232,193 + leuC1 MCAODC_01240 0.32 -3.8 232,194 - leuC1 MCAODC_01240 0.32 +0.7 232,285 - leuC1 MCAODC_01240 0.39 -2.0 232,299 + leuC1 MCAODC_01240 0.40 +0.7 232,370 + leuC1 MCAODC_01240 0.45 -2.8 232,371 - leuC1 MCAODC_01240 0.45 -2.0 232,402 - leuC1 MCAODC_01240 0.47 -4.0 232,402 - leuC1 MCAODC_01240 0.47 -2.9 232,458 + leuC1 MCAODC_01240 0.51 -1.7 232,458 + leuC1 MCAODC_01240 0.51 -3.0 232,458 + leuC1 MCAODC_01240 0.51 -4.0 232,458 + leuC1 MCAODC_01240 0.51 -0.2 232,458 + leuC1 MCAODC_01240 0.51 -0.8 232,458 + leuC1 MCAODC_01240 0.51 -2.0 232,458 + leuC1 MCAODC_01240 0.51 -3.2 232,458 + leuC1 MCAODC_01240 0.51 -0.8 232,458 + leuC1 MCAODC_01240 0.51 -1.8 232,458 + leuC1 MCAODC_01240 0.51 +0.3 232,458 + leuC1 MCAODC_01240 0.51 -1.2 232,459 - leuC1 MCAODC_01240 0.51 -2.7 232,459 - leuC1 MCAODC_01240 0.51 -3.1 232,462 + leuC1 MCAODC_01240 0.52 -2.3 232,614 + leuC1 MCAODC_01240 0.62 -2.4 232,647 + leuC1 MCAODC_01240 0.65 -1.8 232,711 + leuC1 MCAODC_01240 0.69 -2.0 232,711 + leuC1 MCAODC_01240 0.69 -2.9 232,711 + leuC1 MCAODC_01240 0.69 -1.8 232,711 + leuC1 MCAODC_01240 0.69 -1.5 232,711 + leuC1 MCAODC_01240 0.69 -0.2 232,712 - leuC1 MCAODC_01240 0.69 -2.4 232,712 - leuC1 MCAODC_01240 0.69 -5.0 232,713 + leuC1 MCAODC_01240 0.70 +0.3 232,713 + leuC1 MCAODC_01240 0.70 -2.8 232,714 - leuC1 MCAODC_01240 0.70 -2.5 232,792 - leuC1 MCAODC_01240 0.75 -1.2 232,792 - leuC1 MCAODC_01240 0.75 -2.6 232,792 - leuC1 MCAODC_01240 0.75 -2.9 232,851 - leuC1 MCAODC_01240 0.79 -0.7 232,915 - leuC1 MCAODC_01240 0.84 -2.9 233,029 - -1.9 233,133 + +0.0 233,133 + +0.3 233,134 - -3.3 233,137 + -1.0 233,137 + -2.2 233,138 - -0.2 233,351 + leuD MCAODC_01245 0.33 -3.5 233,443 + leuD MCAODC_01245 0.48 -1.9 233,443 + leuD MCAODC_01245 0.48 -2.1 233,443 + leuD MCAODC_01245 0.48 -1.7 233,481 - leuD MCAODC_01245 0.55 -1.0 233,488 + leuD MCAODC_01245 0.56 -3.8 233,488 + leuD MCAODC_01245 0.56 -2.1 233,489 - leuD MCAODC_01245 0.56 -3.3 233,489 - leuD MCAODC_01245 0.56 -3.2 233,521 - leuD MCAODC_01245 0.61 -2.0 233,586 + leuD MCAODC_01245 0.72 -3.1 233,587 - leuD MCAODC_01245 0.72 -1.7 233,628 - leuD MCAODC_01245 0.79 -0.5 233,692 + leuD MCAODC_01245 0.89 -2.7 233,693 - leuD MCAODC_01245 0.90 -2.4 233,747 - -1.0 233,747 - +0.3 233,753 + -0.4 233,754 - -0.8 233,760 + -2.2 233,805 + +2.1 233,805 + -0.0 233,806 - -0.6 233,828 - +0.3 233,836 + -0.3 233,836 + -0.3 233,837 - +2.4 233,914 + -0.2 233,972 + -0.3 233,972 + -0.3 233,973 - +0.3 233,973 - -1.1 234,019 - -0.2 234,019 - -1.6 234,025 + -1.6 234,033 + -0.4 234,033 + -1.8 234,034 - -0.8 234,036 + -0.0 234,036 + -0.7 234,039 - -1.3 234,039 - -2.1 234,139 + -0.1 234,139 + -0.4
Or see this region's nucleotide sequence