Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt baeS and baeR overlap by 4 nucleotides baeR and yegP are separated by 190 nucleotides yegP and yegQ are separated by 147 nucleotides
MCAODC_20760: baeS - two-component system sensor histidine kinase BaeS, at 966,199 to 967,602
baeS
MCAODC_20765: baeR - two-component system response regulator BaeR, at 967,599 to 968,321
baeR
MCAODC_20770: yegP - UPF0339 protein YegP, at 968,512 to 968,844
yegP
MCAODC_20775: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 968,992 to 970,353
yegQ
Position (kb) 967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 966.660 kb on + strand, within baeS at 966.930 kb on + strand, within baeS at 966.957 kb on + strand, within baeS at 966.958 kb on - strand, within baeS at 967.040 kb on + strand, within baeS at 967.041 kb on - strand, within baeS at 967.041 kb on - strand, within baeS at 967.057 kb on - strand, within baeS at 967.238 kb on + strand, within baeS at 967.238 kb on + strand, within baeS at 967.509 kb on + strand at 967.509 kb on + strand at 967.509 kb on + strand at 967.510 kb on - strand at 967.510 kb on - strand at 967.522 kb on - strand at 967.562 kb on + strand at 967.562 kb on + strand at 967.563 kb on - strand at 967.568 kb on + strand at 967.586 kb on + strand at 967.598 kb on + strand at 967.736 kb on - strand, within baeR at 967.743 kb on + strand, within baeR at 967.743 kb on + strand, within baeR at 967.744 kb on - strand, within baeR at 967.847 kb on + strand, within baeR at 967.917 kb on + strand, within baeR at 968.167 kb on - strand, within baeR at 968.176 kb on - strand, within baeR at 968.183 kb on - strand, within baeR at 968.186 kb on - strand, within baeR at 968.195 kb on + strand, within baeR at 968.196 kb on - strand, within baeR at 968.213 kb on + strand, within baeR at 968.214 kb on - strand, within baeR at 968.261 kb on + strand at 968.261 kb on + strand at 968.262 kb on - strand at 968.334 kb on + strand at 968.335 kb on - strand at 968.335 kb on - strand at 968.380 kb on - strand at 968.409 kb on - strand at 968.470 kb on + strand at 968.470 kb on + strand at 968.548 kb on - strand, within yegP at 968.568 kb on - strand, within yegP at 968.608 kb on + strand, within yegP at 968.608 kb on + strand, within yegP at 968.608 kb on + strand, within yegP at 968.609 kb on - strand, within yegP at 968.609 kb on - strand, within yegP at 968.677 kb on + strand, within yegP at 968.678 kb on - strand, within yegP at 968.761 kb on + strand, within yegP at 968.761 kb on + strand, within yegP at 968.761 kb on + strand, within yegP at 968.761 kb on + strand, within yegP at 968.762 kb on - strand, within yegP at 968.762 kb on - strand, within yegP at 968.842 kb on + strand at 968.843 kb on - strand at 968.846 kb on + strand at 968.846 kb on + strand at 968.846 kb on + strand at 968.921 kb on - strand at 968.991 kb on + strand at 968.991 kb on + strand at 968.992 kb on - strand at 968.998 kb on - strand at 969.073 kb on + strand at 969.178 kb on + strand, within yegQ at 969.273 kb on + strand, within yegQ at 969.274 kb on - strand, within yegQ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 966,660 + baeS MCAODC_20760 0.33 -0.8 966,930 + baeS MCAODC_20760 0.52 +0.3 966,957 + baeS MCAODC_20760 0.54 +0.2 966,958 - baeS MCAODC_20760 0.54 -0.5 967,040 + baeS MCAODC_20760 0.60 +0.2 967,041 - baeS MCAODC_20760 0.60 +0.4 967,041 - baeS MCAODC_20760 0.60 -0.0 967,057 - baeS MCAODC_20760 0.61 +1.9 967,238 + baeS MCAODC_20760 0.74 -1.7 967,238 + baeS MCAODC_20760 0.74 +0.2 967,509 + -0.2 967,509 + -0.2 967,509 + +0.2 967,510 - +1.7 967,510 - -1.4 967,522 - -2.6 967,562 + -2.9 967,562 + +1.8 967,563 - -0.4 967,568 + -0.6 967,586 + -0.4 967,598 + +0.3 967,736 - baeR MCAODC_20765 0.19 -0.9 967,743 + baeR MCAODC_20765 0.20 -1.1 967,743 + baeR MCAODC_20765 0.20 +0.2 967,744 - baeR MCAODC_20765 0.20 -0.5 967,847 + baeR MCAODC_20765 0.34 +0.3 967,917 + baeR MCAODC_20765 0.44 -0.2 968,167 - baeR MCAODC_20765 0.79 -1.2 968,176 - baeR MCAODC_20765 0.80 -1.1 968,183 - baeR MCAODC_20765 0.81 -2.3 968,186 - baeR MCAODC_20765 0.81 -0.9 968,195 + baeR MCAODC_20765 0.82 +0.4 968,196 - baeR MCAODC_20765 0.83 -0.0 968,213 + baeR MCAODC_20765 0.85 -0.5 968,214 - baeR MCAODC_20765 0.85 -2.3 968,261 + +1.3 968,261 + -0.8 968,262 - +1.2 968,334 + -0.8 968,335 - +0.9 968,335 - +1.1 968,380 - -0.1 968,409 - -0.3 968,470 + +0.3 968,470 + +0.5 968,548 - yegP MCAODC_20770 0.11 -0.3 968,568 - yegP MCAODC_20770 0.17 -1.3 968,608 + yegP MCAODC_20770 0.29 +0.9 968,608 + yegP MCAODC_20770 0.29 -0.2 968,608 + yegP MCAODC_20770 0.29 +1.6 968,609 - yegP MCAODC_20770 0.29 -0.6 968,609 - yegP MCAODC_20770 0.29 -2.3 968,677 + yegP MCAODC_20770 0.50 +0.5 968,678 - yegP MCAODC_20770 0.50 +0.4 968,761 + yegP MCAODC_20770 0.75 -0.1 968,761 + yegP MCAODC_20770 0.75 -1.8 968,761 + yegP MCAODC_20770 0.75 +0.2 968,761 + yegP MCAODC_20770 0.75 +2.5 968,762 - yegP MCAODC_20770 0.75 +0.0 968,762 - yegP MCAODC_20770 0.75 +2.2 968,842 + +2.4 968,843 - -0.4 968,846 + -0.7 968,846 + -1.5 968,846 + -2.8 968,921 - +1.6 968,991 + +0.4 968,991 + +1.5 968,992 - +0.4 968,998 - -0.3 969,073 + -0.0 969,178 + yegQ MCAODC_20775 0.14 -0.2 969,273 + yegQ MCAODC_20775 0.21 +0.4 969,274 - yegQ MCAODC_20775 0.21 -1.1
Or see this region's nucleotide sequence