Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_24355 and MCAODC_24360 are separated by 220 nucleotides MCAODC_24360 and MCAODC_24365 are separated by 1 nucleotides MCAODC_24365 and MCAODC_24370 are separated by 465 nucleotides MCAODC_24370 and tnp-IS3 are separated by 204 nucleotides
MCAODC_24355: MCAODC_24355 - SAR-endolysin, at 1,595,009 to 1,595,542
_24355
MCAODC_24360: MCAODC_24360 - hypothetical protein, at 1,595,763 to 1,595,876
_24360
MCAODC_24365: MCAODC_24365 - lysis protein, at 1,595,878 to 1,596,345
_24365
MCAODC_24370: MCAODC_24370 - PerC family transcriptional regulator, at 1,596,811 to 1,597,125
_24370
MCAODC_24375: tnp-IS3 - IS3 family transposase, at 1,597,330 to 1,598,217
tnp-IS3
Position (kb)
1595
1596
1597 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1594.893 kb on + strand at 1594.894 kb on - strand at 1594.894 kb on - strand at 1594.934 kb on + strand at 1594.935 kb on - strand at 1594.935 kb on - strand at 1594.966 kb on + strand at 1594.966 kb on + strand at 1594.967 kb on - strand at 1594.968 kb on + strand at 1594.970 kb on + strand at 1594.975 kb on - strand at 1594.979 kb on + strand at 1595.189 kb on - strand, within MCAODC_24355 at 1595.198 kb on - strand, within MCAODC_24355 at 1595.438 kb on - strand, within MCAODC_24355 at 1595.473 kb on + strand, within MCAODC_24355 at 1595.480 kb on + strand, within MCAODC_24355 at 1595.625 kb on - strand at 1595.701 kb on - strand at 1595.707 kb on - strand at 1595.715 kb on - strand at 1595.715 kb on - strand at 1595.733 kb on + strand at 1595.733 kb on + strand at 1595.803 kb on + strand, within MCAODC_24360 at 1595.831 kb on + strand, within MCAODC_24360 at 1595.877 kb on + strand at 1595.974 kb on + strand, within MCAODC_24365 at 1596.030 kb on + strand, within MCAODC_24365 at 1596.031 kb on - strand, within MCAODC_24365 at 1596.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 1,594,893 + +0.4 1,594,894 - -1.7 1,594,894 - -2.3 1,594,934 + +2.3 1,594,935 - -0.6 1,594,935 - -0.6 1,594,966 + +0.9 1,594,966 + +0.3 1,594,967 - -1.4 1,594,968 + -0.7 1,594,970 + +0.3 1,594,975 - +0.9 1,594,979 + +1.1 1,595,189 - MCAODC_24355 0.34 +0.2 1,595,198 - MCAODC_24355 0.35 -0.3 1,595,438 - MCAODC_24355 0.80 +0.5 1,595,473 + MCAODC_24355 0.87 +0.6 1,595,480 + MCAODC_24355 0.88 +1.5 1,595,625 - -0.0 1,595,701 - -0.2 1,595,707 - +0.6 1,595,715 - -0.0 1,595,715 - +0.4 1,595,733 + +0.8 1,595,733 + +0.2 1,595,803 + MCAODC_24360 0.35 -0.3 1,595,831 + MCAODC_24360 0.60 +1.0 1,595,877 + +0.5 1,595,974 + MCAODC_24365 0.21 -2.2 1,596,030 + MCAODC_24365 0.32 +1.2 1,596,031 - MCAODC_24365 0.33 -0.6 1,596,528 - -0.4
Or see this region's nucleotide sequence