Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydaS and MCAODC_22760 are separated by 124 nucleotides MCAODC_22760 and MCAODC_22765 are separated by 237 nucleotides MCAODC_22765 and MCAODC_22770 are separated by 114 nucleotides MCAODC_22770 and MCAODC_22775 are separated by 177 nucleotides
MCAODC_22755: ydaS - transcriptional regulator, at 1,294,891 to 1,295,214
ydaS
MCAODC_22760: MCAODC_22760 - Prophage repressor RacR, at 1,295,339 to 1,295,815
_22760
MCAODC_22765: MCAODC_22765 - DUF1391 domain-containing protein, at 1,296,053 to 1,296,283
_22765
MCAODC_22770: MCAODC_22770 - hypothetical protein, at 1,296,398 to 1,296,913
_22770
MCAODC_22775: MCAODC_22775 - 3'-5' exoribonuclease, at 1,297,091 to 1,297,435
_22775
Position (kb) 1296
1297 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1295.098 kb on + strand, within ydaS at 1295.098 kb on + strand, within ydaS at 1295.098 kb on + strand, within ydaS at 1295.140 kb on + strand, within ydaS at 1295.141 kb on - strand, within ydaS at 1295.141 kb on - strand, within ydaS at 1295.149 kb on - strand, within ydaS at 1295.198 kb on + strand at 1295.198 kb on + strand at 1295.198 kb on + strand at 1295.199 kb on - strand at 1295.199 kb on - strand at 1295.199 kb on - strand at 1295.322 kb on + strand at 1295.333 kb on + strand at 1295.748 kb on + strand, within MCAODC_22760 at 1295.819 kb on + strand at 1295.856 kb on + strand at 1295.863 kb on + strand at 1295.986 kb on - strand at 1295.986 kb on - strand at 1295.986 kb on - strand at 1295.995 kb on + strand at 1295.996 kb on - strand at 1295.999 kb on + strand at 1295.999 kb on + strand at 1295.999 kb on + strand at 1296.027 kb on - strand at 1296.027 kb on - strand at 1296.031 kb on - strand at 1296.078 kb on - strand, within MCAODC_22765 at 1296.078 kb on - strand, within MCAODC_22765 at 1296.078 kb on - strand, within MCAODC_22765 at 1296.215 kb on + strand, within MCAODC_22765 at 1296.298 kb on + strand at 1296.386 kb on - strand at 1296.436 kb on + strand at 1296.436 kb on + strand at 1296.436 kb on + strand at 1296.449 kb on + strand at 1296.454 kb on - strand, within MCAODC_22770 at 1296.454 kb on - strand, within MCAODC_22770 at 1296.454 kb on - strand, within MCAODC_22770 at 1296.597 kb on - strand, within MCAODC_22770 at 1296.618 kb on - strand, within MCAODC_22770 at 1296.631 kb on - strand, within MCAODC_22770 at 1296.664 kb on + strand, within MCAODC_22770 at 1296.665 kb on - strand, within MCAODC_22770 at 1296.665 kb on - strand, within MCAODC_22770 at 1296.666 kb on + strand, within MCAODC_22770 at 1296.667 kb on - strand, within MCAODC_22770 at 1296.667 kb on - strand, within MCAODC_22770 at 1296.667 kb on - strand, within MCAODC_22770 at 1296.728 kb on + strand, within MCAODC_22770 at 1296.738 kb on + strand, within MCAODC_22770 at 1296.738 kb on + strand, within MCAODC_22770 at 1296.782 kb on - strand, within MCAODC_22770 at 1296.881 kb on - strand at 1296.926 kb on + strand at 1296.950 kb on + strand at 1297.049 kb on - strand at 1297.049 kb on - strand at 1297.049 kb on - strand at 1297.049 kb on - strand at 1297.061 kb on - strand at 1297.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 1,295,098 + ydaS MCAODC_22755 0.64 +0.4 1,295,098 + ydaS MCAODC_22755 0.64 +0.7 1,295,098 + ydaS MCAODC_22755 0.64 -0.6 1,295,140 + ydaS MCAODC_22755 0.77 +0.9 1,295,141 - ydaS MCAODC_22755 0.77 +0.3 1,295,141 - ydaS MCAODC_22755 0.77 +0.9 1,295,149 - ydaS MCAODC_22755 0.80 -2.6 1,295,198 + +0.1 1,295,198 + -0.3 1,295,198 + -1.4 1,295,199 - +0.6 1,295,199 - -0.6 1,295,199 - -1.6 1,295,322 + +0.2 1,295,333 + +0.1 1,295,748 + MCAODC_22760 0.86 +0.5 1,295,819 + +0.2 1,295,856 + +1.8 1,295,863 + +0.5 1,295,986 - +1.3 1,295,986 - +2.9 1,295,986 - +0.1 1,295,995 + -0.8 1,295,996 - +0.2 1,295,999 + -0.6 1,295,999 + +0.3 1,295,999 + +0.7 1,296,027 - +1.4 1,296,027 - -0.6 1,296,031 - +0.9 1,296,078 - MCAODC_22765 0.11 +1.4 1,296,078 - MCAODC_22765 0.11 -1.2 1,296,078 - MCAODC_22765 0.11 +0.3 1,296,215 + MCAODC_22765 0.70 -2.3 1,296,298 + -1.6 1,296,386 - +0.9 1,296,436 + +0.7 1,296,436 + +0.1 1,296,436 + +0.9 1,296,449 + +1.1 1,296,454 - MCAODC_22770 0.11 -0.7 1,296,454 - MCAODC_22770 0.11 +0.1 1,296,454 - MCAODC_22770 0.11 -0.9 1,296,597 - MCAODC_22770 0.39 +0.0 1,296,618 - MCAODC_22770 0.43 +1.3 1,296,631 - MCAODC_22770 0.45 -0.2 1,296,664 + MCAODC_22770 0.52 -0.1 1,296,665 - MCAODC_22770 0.52 +0.1 1,296,665 - MCAODC_22770 0.52 +1.3 1,296,666 + MCAODC_22770 0.52 +0.2 1,296,667 - MCAODC_22770 0.52 -0.0 1,296,667 - MCAODC_22770 0.52 +0.1 1,296,667 - MCAODC_22770 0.52 +0.9 1,296,728 + MCAODC_22770 0.64 +0.4 1,296,738 + MCAODC_22770 0.66 -2.0 1,296,738 + MCAODC_22770 0.66 -0.7 1,296,782 - MCAODC_22770 0.74 +0.5 1,296,881 - -0.3 1,296,926 + +0.7 1,296,950 + +0.6 1,297,049 - -0.7 1,297,049 - -0.1 1,297,049 - +0.6 1,297,049 - +0.4 1,297,061 - -0.1 1,297,061 - -1.2
Or see this region's nucleotide sequence