Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20825 and MCAODC_20830 overlap by 1 nucleotides MCAODC_20830 and MCAODC_20835 overlap by 29 nucleotides MCAODC_20835 and MCAODC_20840 are separated by 20 nucleotides
MCAODC_20825: MCAODC_20825 - phage tail protein, at 977,913 to 978,443
_20825
MCAODC_20830: MCAODC_20830 - phage tail protein, at 978,443 to 979,045
_20830
MCAODC_20835: MCAODC_20835 - tail fiber assembly protein, at 979,017 to 979,460
_20835
MCAODC_20840: MCAODC_20840 - Phage tail collar protein, at 979,481 to 980,680
_20840
Position (kb) 979
980 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 978.095 kb on + strand, within MCAODC_20825 at 978.122 kb on + strand, within MCAODC_20825 at 978.237 kb on - strand, within MCAODC_20825 at 978.309 kb on - strand, within MCAODC_20825 at 978.309 kb on - strand, within MCAODC_20825 at 978.317 kb on + strand, within MCAODC_20825 at 978.344 kb on + strand, within MCAODC_20825 at 978.423 kb on + strand at 978.424 kb on - strand at 978.424 kb on - strand at 978.503 kb on + strand at 978.533 kb on - strand, within MCAODC_20830 at 978.591 kb on + strand, within MCAODC_20830 at 978.659 kb on + strand, within MCAODC_20830 at 978.659 kb on + strand, within MCAODC_20830 at 978.659 kb on + strand, within MCAODC_20830 at 978.659 kb on + strand, within MCAODC_20830 at 978.660 kb on - strand, within MCAODC_20830 at 978.738 kb on - strand, within MCAODC_20830 at 978.738 kb on - strand, within MCAODC_20830 at 978.738 kb on - strand, within MCAODC_20830 at 978.748 kb on + strand, within MCAODC_20830 at 978.748 kb on + strand, within MCAODC_20830 at 978.748 kb on + strand, within MCAODC_20830 at 978.748 kb on + strand, within MCAODC_20830 at 978.749 kb on - strand, within MCAODC_20830 at 978.781 kb on + strand, within MCAODC_20830 at 978.955 kb on + strand, within MCAODC_20830 at 978.956 kb on - strand, within MCAODC_20830 at 978.956 kb on - strand, within MCAODC_20830 at 978.972 kb on - strand, within MCAODC_20830 at 979.115 kb on + strand, within MCAODC_20835 at 979.115 kb on + strand, within MCAODC_20835 at 979.115 kb on + strand, within MCAODC_20835 at 979.922 kb on - strand, within MCAODC_20840 at 980.129 kb on - strand, within MCAODC_20840 at 980.142 kb on + strand, within MCAODC_20840 at 980.142 kb on + strand, within MCAODC_20840 at 980.196 kb on + strand, within MCAODC_20840 at 980.196 kb on + strand, within MCAODC_20840 at 980.196 kb on + strand, within MCAODC_20840 at 980.204 kb on + strand, within MCAODC_20840 at 980.204 kb on + strand, within MCAODC_20840 at 980.352 kb on + strand, within MCAODC_20840 at 980.384 kb on + strand, within MCAODC_20840 at 980.400 kb on + strand, within MCAODC_20840 at 980.401 kb on - strand, within MCAODC_20840
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 978,095 + MCAODC_20825 0.34 -0.5 978,122 + MCAODC_20825 0.39 +0.1 978,237 - MCAODC_20825 0.61 +0.8 978,309 - MCAODC_20825 0.75 +0.2 978,309 - MCAODC_20825 0.75 -1.2 978,317 + MCAODC_20825 0.76 +1.1 978,344 + MCAODC_20825 0.81 -0.2 978,423 + -0.9 978,424 - -0.4 978,424 - +0.5 978,503 + +0.1 978,533 - MCAODC_20830 0.15 +0.4 978,591 + MCAODC_20830 0.25 -1.8 978,659 + MCAODC_20830 0.36 +1.7 978,659 + MCAODC_20830 0.36 +0.4 978,659 + MCAODC_20830 0.36 -0.3 978,659 + MCAODC_20830 0.36 -0.5 978,660 - MCAODC_20830 0.36 +0.9 978,738 - MCAODC_20830 0.49 +0.7 978,738 - MCAODC_20830 0.49 +0.7 978,738 - MCAODC_20830 0.49 -0.0 978,748 + MCAODC_20830 0.51 -0.6 978,748 + MCAODC_20830 0.51 -2.4 978,748 + MCAODC_20830 0.51 +1.9 978,748 + MCAODC_20830 0.51 +0.7 978,749 - MCAODC_20830 0.51 +0.5 978,781 + MCAODC_20830 0.56 -0.4 978,955 + MCAODC_20830 0.85 -0.7 978,956 - MCAODC_20830 0.85 -0.5 978,956 - MCAODC_20830 0.85 +0.2 978,972 - MCAODC_20830 0.88 +0.0 979,115 + MCAODC_20835 0.22 -1.1 979,115 + MCAODC_20835 0.22 -1.7 979,115 + MCAODC_20835 0.22 -0.2 979,922 - MCAODC_20840 0.37 -2.9 980,129 - MCAODC_20840 0.54 +0.0 980,142 + MCAODC_20840 0.55 +0.8 980,142 + MCAODC_20840 0.55 +1.5 980,196 + MCAODC_20840 0.60 -0.2 980,196 + MCAODC_20840 0.60 -1.2 980,196 + MCAODC_20840 0.60 -0.6 980,204 + MCAODC_20840 0.60 +1.2 980,204 + MCAODC_20840 0.60 +2.9 980,352 + MCAODC_20840 0.73 -0.6 980,384 + MCAODC_20840 0.75 +2.1 980,400 + MCAODC_20840 0.77 -3.1 980,401 - MCAODC_20840 0.77 -0.5
Or see this region's nucleotide sequence